2012-06-23

Ray 2.0.0 released

Hello,

Ray 2.0.0 codenamed "Dark Astrocyte of Knowledge" is available for download.
This version ships with RayPlatform 1.0.3 codenamed "Gray Pylon of Wisdom".

Not much thing changed since v2.0.0-rc8.

To get Ray v2.0.0:

http://denovoassembler.sf.net


Also, there is a new section on the website for
frequently asked questions.



Changes in Ray between v2.0.0-rc8 and v2.0.0


commit 6adeef3d814dc2acbc32444ec3ed5a49a709e98c
Author: Sébastien Boisvert
Date:   Fri Jun 22 20:58:37 2012 -0400

    This is Ray v2.0.0.

commit 2243df732615cb2419e81c57a233cb1ffd214583
Author: Sébastien Boisvert
Date:   Thu Jun 21 20:27:15 2012 -0400

    Floating numbers must not be stored with the integer type 'int'.

commit 4b4815772354ea402b0ce5a9500d66eed37be8d7
Author: Sébastien Boisvert
Date:   Thu Jun 21 16:23:35 2012 -0400

    This solves a division by 0.

commit d96047c2040bed3395ae36a13505608b617b3346
Author: Sébastien Boisvert
Date:   Thu Jun 21 15:21:24 2012 -0400

    This change set improves the fidelity of Ray when computing peak
    coverage for short seeds (let's say that a short seed has a length
    lower than 512 vertices).
   
    This closes an old ticket.
   
    https://github.com/sebhtml/ray/issues/47

commit 22d4ec0f29d31a659fe5c4791039dd2497264039
Author: Sébastien Boisvert
Date:   Thu Jun 21 15:00:04 2012 -0400

    The multiplicator used for spawning read helpers was changed from 2.0 to 1.5.
    This should remove any assemblies and should not affect contiguity.

commit 048ba764c0424bb74f416276ef7f16cf463cc0fd
Author: Sébastien Boisvert
Date:   Thu Jun 21 14:12:24 2012 -0400

    The peak finder should detects simulated data as well.

commit 7102b16f1f282a0003f9982b42a3a744d9bffe59
Author: Sébastien Boisvert
Date:   Wed Jun 20 14:48:20 2012 -0400

    A compilation warning was removed for an integer comparison.

commit dcc738984c61a478d7da699f19dfae4e2d1ec1f2
Author: Sébastien Boisvert
Date:   Wed Jun 20 14:32:23 2012 -0400

    Routing strategies were updated.

commit 91052b31051fb58561231c0cd2f3bab720184b56
Author: Sébastien Boisvert
Date:   Wed Jun 20 11:12:34 2012 -0400

    Patch information was updated.

commit 8c950405d1695c2ca691537c1eba341155c9731a
Author: Sébastien Boisvert
Date:   Wed Jun 20 09:53:36 2012 -0400

    The release procedure was updated.

commit 95f458950e9856c93b2af120845899975b74851e
Author: Sébastien Boisvert
Date:   Thu Jun 14 14:33:57 2012 -0400

    A new option is available to disable read recycling.

commit 459f26f59076ffabe603f0d8b7163a69e2f51837
Author: Sébastien Boisvert
Date:   Thu Jun 14 14:10:11 2012 -0400

    The options for using checkpointing features requires a
    directory.





Changes in RayPlatform between v1.0.2 and v1.0.3:


commit 09517b6862d04743f64abc181de21b7d8c8b5dbd
Author: Sébastien Boisvert
Date:   Fri Jun 22 20:59:58 2012 -0400

    This is the release of RayPlatform v1.0.3 codenamed
    "Gray Pylon of Wisdom".

commit 86ddad8ee7b9cdbb6142561f38fd75e05e4622f2
Author: Sébastien Boisvert
Date:   Tue Jun 5 13:51:08 2012 -0400

    Ray crashed sometimes when the number of processor cores was less or equal to 3.
    This change fixes this. Ray can run of 1 processor core up to 4096 processor cores
    at the moment with routing. Without routing, the maximum number of cores is larger.
   
    Reported-by: krobinson#seqanswers.com
    Reported-by: severin#seqanswers.com



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