8 reviews about de novo genome assembly


Monya Baker (Editor at Nature)
De novo genome assembly: what every biologist should know
Nature Methods 9, 333–337 (2012) doi:10.1038/nmeth.1935


Paul Flicek & Ewan Birney (European Bioinformatics Institute)
Sense from sequence reads: methods for alignment and assembly
Nature Methods 6, S6 - S12 (2009) 


Mihai Pop
(Center for Bioinformatics and Computational Biology, University of Maryland)
Genome assembly reborn: recent computational challenges
Brief Bioinform (2009) doi: 10.1093/bib/bbp026


Ewan Birney (European Bioinformatics Institute)
Assemblies: the good, the bad, the ugly
Nature Methods 8, 59–60 (2011) doi:10.1038/nmeth0111-59


Jason R. Miller, Sergey Koren, and Granger Sutton
(J. Craig Venter Institute)
Assembly Algorithms for Next-Generation Sequencing Data
Genomics. 2010 Jun;95(6):315-27. Epub 2010 Mar 6.


Phillip E C Compeau, Pavel A Pevzner & Glenn Tesler
(University of California San Diego)
How to apply de Bruijn graphs to genome assembly
Nature Biotechnology 29, 987–991 (2011) doi:10.1038/nbt.2023


Michael C. Schatz, Arthur L. Delcher and Steven L. Salzberg
(Center for Bioinformatics and Computational Biology, University of Maryland)
Assembly of large genomes using second-generation sequencing
Genome Res. 2010. 20: 1165-1173 doi:10.1101/gr.101360.109


Can Alkan, Saba Sajjadian & Evan E Eichler
(Department of Genome Sciences, University of Washington)
Limitations of next-generation genome sequence assembly
Nature Methods 8, 61–65 (2011) doi:10.1038/nmeth.1527


Steven L. Salzberg and James A. Yorke
(University of Maryland)
Beware of mis-assembled genomes
Bioinformatics (2005) 21 (24): 4320-4321. doi: 10.1093/bioinformatics/bti769


2012-04-13 - Item 9 was added.


Adriano said…
Thank you very much!
I'm doing a research to develop a new DNA assembler and I haven't read some of these articles yet.
They will be very useful!

Best Regards.
Unknown said…
Excellent post i am very cool to read this and thinking about more on this blog well its very appreiciate able and knowledge able.
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Sir Thoma said…
I’m definitely coming again to see these articles and blogs.
read more

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