2012-04-12

8 reviews about de novo genome assembly

1.

Monya Baker (Editor at Nature)
De novo genome assembly: what every biologist should know
Nature Methods 9, 333–337 (2012) doi:10.1038/nmeth.1935

2.

Paul Flicek & Ewan Birney (European Bioinformatics Institute)
Sense from sequence reads: methods for alignment and assembly
Nature Methods 6, S6 - S12 (2009) 

3.

Mihai Pop
(Center for Bioinformatics and Computational Biology, University of Maryland)
Genome assembly reborn: recent computational challenges
Brief Bioinform (2009) doi: 10.1093/bib/bbp026

4.

Ewan Birney (European Bioinformatics Institute)
Assemblies: the good, the bad, the ugly
Nature Methods 8, 59–60 (2011) doi:10.1038/nmeth0111-59

5.

Jason R. Miller, Sergey Koren, and Granger Sutton
(J. Craig Venter Institute)
Assembly Algorithms for Next-Generation Sequencing Data
Genomics. 2010 Jun;95(6):315-27. Epub 2010 Mar 6.
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2874646/?tool=pubmed

6.

Phillip E C Compeau, Pavel A Pevzner & Glenn Tesler
(University of California San Diego)
How to apply de Bruijn graphs to genome assembly
Nature Biotechnology 29, 987–991 (2011) doi:10.1038/nbt.2023

7.

Michael C. Schatz, Arthur L. Delcher and Steven L. Salzberg
(Center for Bioinformatics and Computational Biology, University of Maryland)
Assembly of large genomes using second-generation sequencing
Genome Res. 2010. 20: 1165-1173 doi:10.1101/gr.101360.109

8.

Can Alkan, Saba Sajjadian & Evan E Eichler
(Department of Genome Sciences, University of Washington)
Limitations of next-generation genome sequence assembly
Nature Methods 8, 61–65 (2011) doi:10.1038/nmeth.1527

9.

Steven L. Salzberg and James A. Yorke
(University of Maryland)
Beware of mis-assembled genomes
Bioinformatics (2005) 21 (24): 4320-4321. doi: 10.1093/bioinformatics/bti769
http://dx.doi.org/doi:10.1093/bioinformatics/bti769


Changes

2012-04-13 - Item 9 was added.

3 comments:

Adriano said...

Thank you very much!
I'm doing a research to develop a new DNA assembler and I haven't read some of these articles yet.
They will be very useful!

Best Regards.

Abdul Basit said...

Excellent post i am very cool to read this and thinking about more on this blog well its very appreiciate able and knowledge able.
Ainol Novo 10 hero in Pakistan

Sir Thoma said...

I’m definitely coming again to see these articles and blogs.
read more

There was an error in this gadget