Ray 2.0.0 released

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Hello,

Ray 2.0.0 codenamed "Dark Astrocyte of Knowledge" is available for download.
This version ships with RayPlatform 1.0.3 codenamed "Gray Pylon of Wisdom".

Not much thing changed since v2.0.0-rc8.

To get Ray v2.0.0:

http://denovoassembler.sf.net


Also, there is a new section on the website for
frequently asked questions.



Changes in Ray between v2.0.0-rc8 and v2.0.0


commit 6adeef3d814dc2acbc32444ec3ed5a49a709e98c
Author: Sébastien Boisvert
Date:   Fri Jun 22 20:58:37 2012 -0400

    This is Ray v2.0.0.

commit 2243df732615cb2419e81c57a233cb1ffd214583
Author: Sébastien Boisvert
Date:   Thu Jun 21 20:27:15 2012 -0400

    Floating numbers must not be stored with the integer type 'int'.

commit 4b4815772354ea402b0ce5a9500d66eed37be8d7
Author: Sébastien Boisvert
Date:   Thu Jun 21 16:23:35 2012 -0400

    This solves a division by 0.

commit d96047c2040bed3395ae36a13505608b617b3346
Author: Sébastien Boisvert
Date:   Thu Jun 21 15:21:24 2012 -0400

    This change set improves the fidelity of Ray when computing peak
    coverage for short seeds (let's say that a short seed has a length
    lower than 512 vertices).
   
    This closes an old ticket.
   
    https://github.com/sebhtml/ray/issues/47

commit 22d4ec0f29d31a659fe5c4791039dd2497264039
Author: Sébastien Boisvert
Date:   Thu Jun 21 15:00:04 2012 -0400

    The multiplicator used for spawning read helpers was changed from 2.0 to 1.5.
    This should remove any assemblies and should not affect contiguity.

commit 048ba764c0424bb74f416276ef7f16cf463cc0fd
Author: Sébastien Boisvert
Date:   Thu Jun 21 14:12:24 2012 -0400

    The peak finder should detects simulated data as well.

commit 7102b16f1f282a0003f9982b42a3a744d9bffe59
Author: Sébastien Boisvert
Date:   Wed Jun 20 14:48:20 2012 -0400

    A compilation warning was removed for an integer comparison.

commit dcc738984c61a478d7da699f19dfae4e2d1ec1f2
Author: Sébastien Boisvert
Date:   Wed Jun 20 14:32:23 2012 -0400

    Routing strategies were updated.

commit 91052b31051fb58561231c0cd2f3bab720184b56
Author: Sébastien Boisvert
Date:   Wed Jun 20 11:12:34 2012 -0400

    Patch information was updated.

commit 8c950405d1695c2ca691537c1eba341155c9731a
Author: Sébastien Boisvert
Date:   Wed Jun 20 09:53:36 2012 -0400

    The release procedure was updated.

commit 95f458950e9856c93b2af120845899975b74851e
Author: Sébastien Boisvert
Date:   Thu Jun 14 14:33:57 2012 -0400

    A new option is available to disable read recycling.

commit 459f26f59076ffabe603f0d8b7163a69e2f51837
Author: Sébastien Boisvert
Date:   Thu Jun 14 14:10:11 2012 -0400

    The options for using checkpointing features requires a
    directory.





Changes in RayPlatform between v1.0.2 and v1.0.3:


commit 09517b6862d04743f64abc181de21b7d8c8b5dbd
Author: Sébastien Boisvert
Date:   Fri Jun 22 20:59:58 2012 -0400

    This is the release of RayPlatform v1.0.3 codenamed
    "Gray Pylon of Wisdom".

commit 86ddad8ee7b9cdbb6142561f38fd75e05e4622f2
Author: Sébastien Boisvert
Date:   Tue Jun 5 13:51:08 2012 -0400

    Ray crashed sometimes when the number of processor cores was less or equal to 3.
    This change fixes this. Ray can run of 1 processor core up to 4096 processor cores
    at the moment with routing. Without routing, the maximum number of cores is larger.
   
    Reported-by: krobinson#seqanswers.com
    Reported-by: severin#seqanswers.com

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