2014-06-08

Early prototype of our work with actors for genomics

Our work on biosal (bsal) is advancing well.

Here is an example of what you can do easily with the actor model.
This actor machine emulator contains 4 biosal nodes, each with 24 threads and 23 workers (23 worker threads and 1 communication thread). The actor machine executes actors, and the behavior of actor is specified with scripts (in C 1999).

The command I used on the supercomputer to launch the app:

# 4 physical computers, with a fast interconnect
# 4 bsal nodes
# 24 threads per bsal node

#       -d depth       Depth of each processor (number of threads)
#       -N pes         PEs per node
#       -n width       Number of processors needed

aprun -n 4 -N 1 -d 24 biosal/example_controller -threads-per-node 24 datasets/Iowa_Continuous_Corn/*


This is the standard output. This actor computation ran in 3 minutes, 39 seconds. The nice thing about running an actor computation is that the actor machine can collect easily a lot of metrics. These metrics are displayed at the end of the log.


 ############################# Beagle Job Start #############################
 #                  Job ID: 2716005  Project: CI-###########                  #
 #                 Start time: Sat Jun  7 23:00:28 CDT 2014                 #
 #                       Resources: walltime=04:00:00                       #
 ############################################################################

----------------------------------------------
biosal> node/0: 24 threads, 23 workers
actor 800941600 spawned controller 402725412
actor 800941600, starting controller 402725412
DEBUG bsal_input_controller_prepare_spawners
DEBUG bsal_input_controller_prepare_spawners
DEBUG bsal_input_controller_prepare_spawners
DEBUG bsal_input_controller_prepare_spawners
DEBUG bsal_input_controller_prepare_spawners
DEBUG all spawners are prepared
actor 800941600 add file -threads-per-node to actor 402725412
actor 800941600 add file 24 to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/foo to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/foo~ to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/foo.out to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/GPIC.1424-1.1371.fastq to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/GPIC.1424-2.1371.fastq to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/GPIC.1424-3.1371.fastq to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/GPIC.1424-4.1371.fastq to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/GPIC.1424-5.1371.fastq to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/GPIC.1424-6.1371.fastq to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/GPIC.1424-7.1371.fastq to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/GPIC.1425-1.1367.fastq to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/GPIC.1425-2.1367.fastq to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/GPIC.1425-3.1367.fastq to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/GPIC.1425-4.1367.fastq to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/GPIC.1425-5.1367.fastq to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/GPIC.1425-6.1367.fastq to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/GPIC.1425-7.1367.fastq to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/GPIC.649-4.899.fastq to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/GPIC.868-1.1053.fastq to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/GPIC.868-2.1053.fastq to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/GPIC.868-3.1053.fastq to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/GPIC.868-4.1053.fastq to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/GPIC.868-5.1053.fastq to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/GPIC.868-6.1053.fastq to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/GPIC.895-5.1070.fastq to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/GPIC.895-6.1070.fastq to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/GPIC.895-7.1070.fastq to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/HTHO.1209-1.1231.fastq to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/HTHO.1209-2.1231.fastq to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/HTHO.1300-6.1364.fastq to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/HTHO.1429-2.1388.fastq to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/index.html to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/index.html?C=D;O=A to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/index.html?C=D;O=D to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/index.html?C=M;O=A to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/index.html?C=M;O=D to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/index.html?C=N;O=A to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/index.html?C=N;O=D to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/index.html?C=S;O=A to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/index.html?C=S;O=D to actor 402725412
actor 800941600 no more files to add
actor 800941600 asks actor 402725412 to distribute data
DEBUG actor 402725412 receives stream 1392161576 from spawner 800941600 for file -threads-per-node
----------------------------------------------
biosal> node/2: 24 threads, 23 workers
DEBUG actor 402725412 receives stream 1162079149 from spawner 1163079153 for file 24
DEBUG actor 402725412 receives stream 34225682 from spawner 139172306 for file datasets/Iowa_Continuous_Corn/foo
DEBUG actor 402725412 receives stream 1399876531 from spawner 1114128863 for file datasets/Iowa_Continuous_Corn/foo~
DEBUG actor 402725412 receives stream 148429560 from spawner 800941600 for file datasets/Iowa_Continuous_Corn/foo.out
----------------------------------------------
biosal> node/3: 24 threads, 23 workers
----------------------------------------------
biosal> node/1: 24 threads, 23 workers
DEBUG actor 402725412 receives stream 680978333 from spawner 1163079153 for file datasets/Iowa_Continuous_Corn/GPIC.1424-1.1371.fastq
DEBUG actor 402725412 receives stream 649752862 from spawner 139172306 for file datasets/Iowa_Continuous_Corn/GPIC.1424-2.1371.fastq
DEBUG actor 402725412 receives stream 122779715 from spawner 1114128863 for file datasets/Iowa_Continuous_Corn/GPIC.1424-3.1371.fastq
DEBUG actor 402725412 receives stream 1212714640 from spawner 800941600 for file datasets/Iowa_Continuous_Corn/GPIC.1424-4.1371.fastq
DEBUG actor 402725412 receives stream 1830160613 from spawner 1163079153 for file datasets/Iowa_Continuous_Corn/GPIC.1424-5.1371.fastq
DEBUG actor 402725412 receives stream 1144056826 from spawner 139172306 for file datasets/Iowa_Continuous_Corn/GPIC.1424-6.1371.fastq
DEBUG actor 402725412 receives stream 1288734375 from spawner 1114128863 for file datasets/Iowa_Continuous_Corn/GPIC.1424-7.1371.fastq
DEBUG actor 402725412 receives stream 547646904 from spawner 800941600 for file datasets/Iowa_Continuous_Corn/GPIC.1425-1.1367.fastq
DEBUG actor 402725412 receives stream 1630775601 from spawner 1163079153 for file datasets/Iowa_Continuous_Corn/GPIC.1425-2.1367.fastq
DEBUG actor 402725412 receives stream 602765326 from spawner 139172306 for file datasets/Iowa_Continuous_Corn/GPIC.1425-3.1367.fastq
DEBUG actor 402725412 receives stream 1882977711 from spawner 1114128863 for file datasets/Iowa_Continuous_Corn/GPIC.1425-4.1367.fastq
DEBUG actor 402725412 receives stream 721954240 from spawner 800941600 for file datasets/Iowa_Continuous_Corn/GPIC.1425-5.1367.fastq
DEBUG actor 402725412 receives stream 261732057 from spawner 1163079153 for file datasets/Iowa_Continuous_Corn/GPIC.1425-6.1367.fastq
DEBUG actor 402725412 receives stream 675296634 from spawner 139172306 for file datasets/Iowa_Continuous_Corn/GPIC.1425-7.1367.fastq
DEBUG actor 402725412 receives stream 468223423 from spawner 1114128863 for file datasets/Iowa_Continuous_Corn/GPIC.649-4.899.fastq
DEBUG actor 402725412 receives stream 94072032 from spawner 800941600 for file datasets/Iowa_Continuous_Corn/GPIC.868-1.1053.fastq
DEBUG actor 402725412 receives stream 609867641 from spawner 1163079153 for file datasets/Iowa_Continuous_Corn/GPIC.868-2.1053.fastq
DEBUG actor 402725412 receives stream 269542554 from spawner 139172306 for file datasets/Iowa_Continuous_Corn/GPIC.868-3.1053.fastq
DEBUG actor 402725412 receives stream 780701627 from spawner 1114128863 for file datasets/Iowa_Continuous_Corn/GPIC.868-4.1053.fastq
DEBUG actor 402725412 receives stream 920849820 from spawner 800941600 for file datasets/Iowa_Continuous_Corn/GPIC.868-5.1053.fastq
DEBUG actor 402725412 receives stream 572359065 from spawner 1163079153 for file datasets/Iowa_Continuous_Corn/GPIC.868-6.1053.fastq
DEBUG actor 402725412 receives stream 257301510 from spawner 139172306 for file datasets/Iowa_Continuous_Corn/GPIC.895-5.1070.fastq
DEBUG actor 402725412 receives stream 1823817815 from spawner 1114128863 for file datasets/Iowa_Continuous_Corn/GPIC.895-6.1070.fastq
DEBUG actor 402725412 receives stream 70674448 from spawner 800941600 for file datasets/Iowa_Continuous_Corn/GPIC.895-7.1070.fastq
DEBUG actor 402725412 receives stream 1774246797 from spawner 1163079153 for file datasets/Iowa_Continuous_Corn/HTHO.1209-1.1231.fastq
DEBUG actor 402725412 receives stream 1044554942 from spawner 139172306 for file datasets/Iowa_Continuous_Corn/HTHO.1209-2.1231.fastq
DEBUG actor 402725412 receives stream 696392135 from spawner 1114128863 for file datasets/Iowa_Continuous_Corn/HTHO.1300-6.1364.fastq
DEBUG actor 402725412 receives stream 363590824 from spawner 800941600 for file datasets/Iowa_Continuous_Corn/HTHO.1429-2.1388.fastq
DEBUG actor 402725412 receives stream 454036081 from spawner 1163079153 for file datasets/Iowa_Continuous_Corn/index.html
DEBUG actor 402725412 receives stream 746596374 from spawner 139172306 for file datasets/Iowa_Continuous_Corn/index.html?C=D;O=A
DEBUG actor 402725412 receives stream 716706071 from spawner 1114128863 for file datasets/Iowa_Continuous_Corn/index.html?C=D;O=D
DEBUG actor 402725412 receives stream 575385800 from spawner 800941600 for file datasets/Iowa_Continuous_Corn/index.html?C=M;O=A
DEBUG actor 402725412 receives stream 1079327317 from spawner 1163079153 for file datasets/Iowa_Continuous_Corn/index.html?C=M;O=D
DEBUG actor 402725412 receives stream 503721090 from spawner 139172306 for file datasets/Iowa_Continuous_Corn/index.html?C=N;O=A
DEBUG actor 402725412 receives stream 218874463 from spawner 1114128863 for file datasets/Iowa_Continuous_Corn/index.html?C=N;O=D
DEBUG actor 402725412 receives stream 1718717096 from spawner 800941600 for file datasets/Iowa_Continuous_Corn/index.html?C=S;O=A
DEBUG actor 402725412 receives stream 1847021925 from spawner 1163079153 for file datasets/Iowa_Continuous_Corn/index.html?C=S;O=D
DEBUG actor:402725412 receives from actor:602765326, file datasets/Iowa_Continuous_Corn/GPIC.1425-3.1367.fastq, 10001000 entries so far
DEBUG actor:402725412 receives from actor:649752862, file datasets/Iowa_Continuous_Corn/GPIC.1424-2.1371.fastq, 10001000 entries so far
DEBUG actor:402725412 receives from actor:675296634, file datasets/Iowa_Continuous_Corn/GPIC.1425-7.1367.fastq, 10002000 entries so far
DEBUG actor:402725412 receives from actor:1144056826, file datasets/Iowa_Continuous_Corn/GPIC.1424-6.1371.fastq, 10001000 entries so far
DEBUG actor:402725412 receives from actor:269542554, file datasets/Iowa_Continuous_Corn/GPIC.868-3.1053.fastq, 10001000 entries so far
DEBUG actor:402725412 receives from actor:257301510, file datasets/Iowa_Continuous_Corn/GPIC.895-5.1070.fastq, 10001000 entries so far
DEBUG actor:402725412 receives from actor:1044554942, file datasets/Iowa_Continuous_Corn/HTHO.1209-2.1231.fastq, 10001000 entries so far
DEBUG actor:402725412 receives from actor:122779715, file datasets/Iowa_Continuous_Corn/GPIC.1424-3.1371.fastq, 10001000 entries so far
DEBUG actor:402725412 receives from actor:1288734375, file datasets/Iowa_Continuous_Corn/GPIC.1424-7.1371.fastq, 10001000 entries so far
DEBUG actor:402725412 receives from actor:1882977711, file datasets/Iowa_Continuous_Corn/GPIC.1425-4.1367.fastq, 10001000 entries so far
DEBUG actor:402725412 receives from actor:780701627, file datasets/Iowa_Continuous_Corn/GPIC.868-4.1053.fastq, 10001000 entries so far
DEBUG actor:402725412 receives from actor:1823817815, file datasets/Iowa_Continuous_Corn/GPIC.895-6.1070.fastq, 10001000 entries so far
DEBUG actor:402725412 receives from actor:468223423, file datasets/Iowa_Continuous_Corn/GPIC.649-4.899.fastq, 10001000 entries so far
DEBUG actor:402725412 receives from actor:696392135, file datasets/Iowa_Continuous_Corn/HTHO.1300-6.1364.fastq, 10001000 entries so far
DEBUG actor:402725412 receives from actor:1830160613, file datasets/Iowa_Continuous_Corn/GPIC.1424-5.1371.fastq, 10001000 entries so far
DEBUG actor:402725412 receives from actor:680978333, file datasets/Iowa_Continuous_Corn/GPIC.1424-1.1371.fastq, 10001000 entries so far
DEBUG actor:402725412 receives from actor:261732057, file datasets/Iowa_Continuous_Corn/GPIC.1425-6.1367.fastq, 10001000 entries so far
DEBUG actor:402725412 receives from actor:1630775601, file datasets/Iowa_Continuous_Corn/GPIC.1425-2.1367.fastq, 10001000 entries so far
DEBUG actor:402725412 receives from actor:609867641, file datasets/Iowa_Continuous_Corn/GPIC.868-2.1053.fastq, 10001000 entries so far
DEBUG actor:402725412 receives from actor:1774246797, file datasets/Iowa_Continuous_Corn/HTHO.1209-1.1231.fastq, 10001000 entries so far
DEBUG actor:402725412 receives from actor:572359065, file datasets/Iowa_Continuous_Corn/GPIC.868-6.1053.fastq, 10001000 entries so far
DEBUG actor:402725412 receives from actor:721954240, file datasets/Iowa_Continuous_Corn/GPIC.1425-5.1367.fastq, 10001000 entries so far
DEBUG actor:402725412 receives from actor:1212714640, file datasets/Iowa_Continuous_Corn/GPIC.1424-4.1371.fastq, 10001000 entries so far
DEBUG actor:402725412 receives from actor:547646904, file datasets/Iowa_Continuous_Corn/GPIC.1425-1.1367.fastq, 10001000 entries so far
DEBUG actor:402725412 receives from actor:920849820, file datasets/Iowa_Continuous_Corn/GPIC.868-5.1053.fastq, 10001000 entries so far
DEBUG actor:402725412 receives from actor:94072032, file datasets/Iowa_Continuous_Corn/GPIC.868-1.1053.fastq, 10001000 entries so far
DEBUG actor:402725412 receives from actor:70674448, file datasets/Iowa_Continuous_Corn/GPIC.895-7.1070.fastq, 10001000 entries so far
DEBUG actor:402725412 receives from actor:363590824, file datasets/Iowa_Continuous_Corn/HTHO.1429-2.1388.fastq, 10001000 entries so far
DEBUG actor:402725412 receives from actor:1288734375, file datasets/Iowa_Continuous_Corn/GPIC.1424-7.1371.fastq, 20002000 entries so far
DEBUG actor:402725412 receives from actor:122779715, file datasets/Iowa_Continuous_Corn/GPIC.1424-3.1371.fastq, 20002000 entries so far
DEBUG actor:402725412 receives from actor:1882977711, file datasets/Iowa_Continuous_Corn/GPIC.1425-4.1367.fastq, 20002000 entries so far
DEBUG actor:402725412 receives from actor:1823817815, file datasets/Iowa_Continuous_Corn/GPIC.895-6.1070.fastq, 20002000 entries so far
DEBUG actor:402725412 receives from actor:780701627, file datasets/Iowa_Continuous_Corn/GPIC.868-4.1053.fastq, 20002000 entries so far
DEBUG actor:402725412 receives from actor:468223423, file datasets/Iowa_Continuous_Corn/GPIC.649-4.899.fastq, 20002000 entries so far
DEBUG actor:402725412 receives from actor:696392135, file datasets/Iowa_Continuous_Corn/HTHO.1300-6.1364.fastq, 20002000 entries so far
DEBUG actor:402725412 receives from actor:602765326, file datasets/Iowa_Continuous_Corn/GPIC.1425-3.1367.fastq, 20002000 entries so far
DEBUG actor:402725412 receives from actor:649752862, file datasets/Iowa_Continuous_Corn/GPIC.1424-2.1371.fastq, 20002000 entries so far
DEBUG actor:402725412 receives from actor:1144056826, file datasets/Iowa_Continuous_Corn/GPIC.1424-6.1371.fastq, 20002000 entries so far
DEBUG actor:402725412 receives from actor:269542554, file datasets/Iowa_Continuous_Corn/GPIC.868-3.1053.fastq, 20002000 entries so far
DEBUG actor:402725412 receives from actor:675296634, file datasets/Iowa_Continuous_Corn/GPIC.1425-7.1367.fastq, 20004000 entries so far
DEBUG actor:402725412 receives from actor:257301510, file datasets/Iowa_Continuous_Corn/GPIC.895-5.1070.fastq, 20002000 entries so far
DEBUG actor:402725412 receives from actor:1044554942, file datasets/Iowa_Continuous_Corn/HTHO.1209-2.1231.fastq, 20002000 entries so far
DEBUG actor:402725412 receives from actor:261732057, file datasets/Iowa_Continuous_Corn/GPIC.1425-6.1367.fastq, 20002000 entries so far
DEBUG actor:402725412 receives from actor:680978333, file datasets/Iowa_Continuous_Corn/GPIC.1424-1.1371.fastq, 20003000 entries so far
DEBUG actor:402725412 receives from actor:1830160613, file datasets/Iowa_Continuous_Corn/GPIC.1424-5.1371.fastq, 20002000 entries so far
DEBUG actor:402725412 receives from actor:1630775601, file datasets/Iowa_Continuous_Corn/GPIC.1425-2.1367.fastq, 20002000 entries so far
DEBUG actor:402725412 receives from actor:609867641, file datasets/Iowa_Continuous_Corn/GPIC.868-2.1053.fastq, 20003000 entries so far
DEBUG actor:402725412 receives from actor:1774246797, file datasets/Iowa_Continuous_Corn/HTHO.1209-1.1231.fastq, 20002000 entries so far
DEBUG actor:402725412 receives from actor:572359065, file datasets/Iowa_Continuous_Corn/GPIC.868-6.1053.fastq, 20003000 entries so far
DEBUG actor:402725412 receives from actor:1212714640, file datasets/Iowa_Continuous_Corn/GPIC.1424-4.1371.fastq, 20002000 entries so far
DEBUG actor:402725412 receives from actor:721954240, file datasets/Iowa_Continuous_Corn/GPIC.1425-5.1367.fastq, 20002000 entries so far
DEBUG actor:402725412 receives from actor:547646904, file datasets/Iowa_Continuous_Corn/GPIC.1425-1.1367.fastq, 20002000 entries so far
DEBUG actor:402725412 receives from actor:920849820, file datasets/Iowa_Continuous_Corn/GPIC.868-5.1053.fastq, 20002000 entries so far
DEBUG actor:402725412 receives from actor:94072032, file datasets/Iowa_Continuous_Corn/GPIC.868-1.1053.fastq, 20002000 entries so far
DEBUG actor:402725412 receives from actor:70674448, file datasets/Iowa_Continuous_Corn/GPIC.895-7.1070.fastq, 20002000 entries so far
DEBUG actor:402725412 receives from actor:363590824, file datasets/Iowa_Continuous_Corn/HTHO.1429-2.1388.fastq, 20002000 entries so far
DEBUG actor:402725412 receives from actor:602765326, file datasets/Iowa_Continuous_Corn/GPIC.1425-3.1367.fastq, 30003000 entries so far
DEBUG actor:402725412 receives from actor:649752862, file datasets/Iowa_Continuous_Corn/GPIC.1424-2.1371.fastq, 30003000 entries so far
DEBUG actor:402725412 receives from actor:269542554, file datasets/Iowa_Continuous_Corn/GPIC.868-3.1053.fastq, 30003000 entries so far
DEBUG actor:402725412 receives from actor:675296634, file datasets/Iowa_Continuous_Corn/GPIC.1425-7.1367.fastq, 30005000 entries so far
DEBUG actor:402725412 receives from actor:257301510, file datasets/Iowa_Continuous_Corn/GPIC.895-5.1070.fastq, 30003000 entries so far
DEBUG actor:402725412 receives from actor:1144056826, file datasets/Iowa_Continuous_Corn/GPIC.1424-6.1371.fastq, 30003000 entries so far
DEBUG actor:402725412 receives from actor:1044554942, file datasets/Iowa_Continuous_Corn/HTHO.1209-2.1231.fastq, 30003000 entries so far
DEBUG actor:402725412 receives from actor:122779715, file datasets/Iowa_Continuous_Corn/GPIC.1424-3.1371.fastq, 30004000 entries so far
DEBUG actor:402725412 receives from actor:1882977711, file datasets/Iowa_Continuous_Corn/GPIC.1425-4.1367.fastq, 30004000 entries so far
DEBUG actor:402725412 receives from actor:1288734375, file datasets/Iowa_Continuous_Corn/GPIC.1424-7.1371.fastq, 30003000 entries so far
DEBUG actor:402725412 receives from actor:780701627, file datasets/Iowa_Continuous_Corn/GPIC.868-4.1053.fastq, 30003000 entries so far
DEBUG actor:402725412 receives from actor:1823817815, file datasets/Iowa_Continuous_Corn/GPIC.895-6.1070.fastq, 30003000 entries so far
DEBUG actor:402725412 receives from actor:468223423, file datasets/Iowa_Continuous_Corn/GPIC.649-4.899.fastq, 30003000 entries so far
DEBUG actor:402725412 receives from actor:696392135, file datasets/Iowa_Continuous_Corn/HTHO.1300-6.1364.fastq, 30003000 entries so far
DEBUG actor:402725412 receives from actor:547646904, file datasets/Iowa_Continuous_Corn/GPIC.1425-1.1367.fastq, 30003000 entries so far
DEBUG actor:402725412 receives from actor:1212714640, file datasets/Iowa_Continuous_Corn/GPIC.1424-4.1371.fastq, 30003000 entries so far
DEBUG actor:402725412 receives from actor:721954240, file datasets/Iowa_Continuous_Corn/GPIC.1425-5.1367.fastq, 30003000 entries so far
DEBUG actor:402725412 receives from actor:920849820, file datasets/Iowa_Continuous_Corn/GPIC.868-5.1053.fastq, 30003000 entries so far
DEBUG actor:402725412 receives from actor:94072032, file datasets/Iowa_Continuous_Corn/GPIC.868-1.1053.fastq, 30003000 entries so far
DEBUG actor:402725412 receives from actor:70674448, file datasets/Iowa_Continuous_Corn/GPIC.895-7.1070.fastq, 30003000 entries so far
DEBUG actor:402725412 receives from actor:363590824, file datasets/Iowa_Continuous_Corn/HTHO.1429-2.1388.fastq, 30003000 entries so far
DEBUG actor:402725412 receives from actor:1830160613, file datasets/Iowa_Continuous_Corn/GPIC.1424-5.1371.fastq, 30003000 entries so far
DEBUG actor:402725412 receives from actor:1630775601, file datasets/Iowa_Continuous_Corn/GPIC.1425-2.1367.fastq, 30003000 entries so far
DEBUG actor:402725412 receives from actor:261732057, file datasets/Iowa_Continuous_Corn/GPIC.1425-6.1367.fastq, 30003000 entries so far
DEBUG actor:402725412 receives from actor:680978333, file datasets/Iowa_Continuous_Corn/GPIC.1424-1.1371.fastq, 30004000 entries so far
DEBUG actor:402725412 receives from actor:609867641, file datasets/Iowa_Continuous_Corn/GPIC.868-2.1053.fastq, 30005000 entries so far
DEBUG actor:402725412 receives from actor:1774246797, file datasets/Iowa_Continuous_Corn/HTHO.1209-1.1231.fastq, 30003000 entries so far
DEBUG actor:402725412 receives from actor:572359065, file datasets/Iowa_Continuous_Corn/GPIC.868-6.1053.fastq, 30004000 entries so far
DEBUG actor:402725412 receives from actor:602765326, file datasets/Iowa_Continuous_Corn/GPIC.1425-3.1367.fastq, 40004000 entries so far
DEBUG actor:402725412 receives from actor:649752862, file datasets/Iowa_Continuous_Corn/GPIC.1424-2.1371.fastq, 40005000 entries so far
DEBUG actor:402725412 receives from actor:269542554, file datasets/Iowa_Continuous_Corn/GPIC.868-3.1053.fastq, 40004000 entries so far
DEBUG actor:402725412 receives from actor:257301510, file datasets/Iowa_Continuous_Corn/GPIC.895-5.1070.fastq, 40004000 entries so far
DEBUG actor:402725412 receives from actor:675296634, file datasets/Iowa_Continuous_Corn/GPIC.1425-7.1367.fastq, 40006000 entries so far
DEBUG actor:402725412 receives from actor:1144056826, file datasets/Iowa_Continuous_Corn/GPIC.1424-6.1371.fastq, 40005000 entries so far
DEBUG actor:402725412 receives from actor:1044554942, file datasets/Iowa_Continuous_Corn/HTHO.1209-2.1231.fastq, 40004000 entries so far
DEBUG Actor 402725412 received from actor 696392135 for file datasets/Iowa_Continuous_Corn/HTHO.1300-6.1364.fastq: 39704380 entries
DEBUG actor:402725412 receives from actor:1882977711, file datasets/Iowa_Continuous_Corn/GPIC.1425-4.1367.fastq, 40005000 entries so far
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DEBUG Actor 402725412 received from actor 1774246797 for file datasets/Iowa_Continuous_Corn/HTHO.1209-1.1231.fastq: 47646564 entries
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DEBUG Actor 402725412 received from actor 468223423 for file datasets/Iowa_Continuous_Corn/GPIC.649-4.899.fastq: 54662170 entries
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DEBUG Actor 402725412 received from actor 257301510 for file datasets/Iowa_Continuous_Corn/GPIC.895-5.1070.fastq: 56963934 entries
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DEBUG Actor 402725412 received from actor 269542554 for file datasets/Iowa_Continuous_Corn/GPIC.868-3.1053.fastq: 62814332 entries
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DEBUG Actor 402725412 received from actor 572359065 for file datasets/Iowa_Continuous_Corn/GPIC.868-6.1053.fastq: 62568148 entries
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DEBUG Actor 402725412 received from actor 920849820 for file datasets/Iowa_Continuous_Corn/GPIC.868-5.1053.fastq: 62681112 entries
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DEBUG actor:402725412 receives from actor:1288734375, file datasets/Iowa_Continuous_Corn/GPIC.1424-7.1371.fastq, 80008000 entries so far
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DEBUG actor:402725412 receives from actor:363590824, file datasets/Iowa_Continuous_Corn/HTHO.1429-2.1388.fastq, 70007000 entries so far
DEBUG Actor 402725412 received from actor 363590824 for file datasets/Iowa_Continuous_Corn/HTHO.1429-2.1388.fastq: 70800844 entries
DEBUG actor:402725412 receives from actor:1288734375, file datasets/Iowa_Continuous_Corn/GPIC.1424-7.1371.fastq, 90009000 entries so far
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DEBUG actor:402725412 receives from actor:1882977711, file datasets/Iowa_Continuous_Corn/GPIC.1425-4.1367.fastq, 90010000 entries so far
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DEBUG actor:402725412 receives from actor:1830160613, file datasets/Iowa_Continuous_Corn/GPIC.1424-5.1371.fastq, 80009000 entries so far
DEBUG actor:402725412 receives from actor:680978333, file datasets/Iowa_Continuous_Corn/GPIC.1424-1.1371.fastq, 80009000 entries so far
DEBUG actor:402725412 receives from actor:721954240, file datasets/Iowa_Continuous_Corn/GPIC.1425-5.1367.fastq, 80008000 entries so far
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DEBUG Actor 402725412 received from actor 1144056826 for file datasets/Iowa_Continuous_Corn/GPIC.1424-6.1371.fastq: 98895622 entries
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DEBUG actor:402725412 receives from actor:1288734375, file datasets/Iowa_Continuous_Corn/GPIC.1424-7.1371.fastq, 100010000 entries so far
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DEBUG Actor 402725412 received from actor 649752862 for file datasets/Iowa_Continuous_Corn/GPIC.1424-2.1371.fastq: 99214846 entries
DEBUG Actor 402725412 received from actor 122779715 for file datasets/Iowa_Continuous_Corn/GPIC.1424-3.1371.fastq: 100163104 entries
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DEBUG actor:402725412 receives from actor:675296634, file datasets/Iowa_Continuous_Corn/GPIC.1425-7.1367.fastq, 100013000 entries so far
DEBUG Actor 402725412 received from actor 1288734375 for file datasets/Iowa_Continuous_Corn/GPIC.1424-7.1371.fastq: 101018426 entries
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DEBUG Actor 402725412 received from actor 1882977711 for file datasets/Iowa_Continuous_Corn/GPIC.1425-4.1367.fastq: 104209684 entries
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DEBUG actor:402725412 receives from actor:680978333, file datasets/Iowa_Continuous_Corn/GPIC.1424-1.1371.fastq, 90010000 entries so far
DEBUG actor:402725412 receives from actor:1630775601, file datasets/Iowa_Continuous_Corn/GPIC.1425-2.1367.fastq, 90009000 entries so far
DEBUG Actor 402725412 received from actor 680978333 for file datasets/Iowa_Continuous_Corn/GPIC.1424-1.1371.fastq: 90613544 entries
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DEBUG actor:402725412 receives from actor:547646904, file datasets/Iowa_Continuous_Corn/GPIC.1425-1.1367.fastq, 90009000 entries so far
DEBUG actor:402725412 receives from actor:1212714640, file datasets/Iowa_Continuous_Corn/GPIC.1424-4.1371.fastq, 90009000 entries so far
DEBUG Actor 402725412 received from actor 602765326 for file datasets/Iowa_Continuous_Corn/GPIC.1425-3.1367.fastq: 108708372 entries
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DEBUG Actor 402725412 received from actor 547646904 for file datasets/Iowa_Continuous_Corn/GPIC.1425-1.1367.fastq: 96424282 entries
DEBUG actor:402725412 receives from actor:261732057, file datasets/Iowa_Continuous_Corn/GPIC.1425-6.1367.fastq, 100011000 entries so far
DEBUG actor:402725412 receives from actor:1630775601, file datasets/Iowa_Continuous_Corn/GPIC.1425-2.1367.fastq, 100010000 entries so far
DEBUG actor:402725412 receives from actor:721954240, file datasets/Iowa_Continuous_Corn/GPIC.1425-5.1367.fastq, 100010000 entries so far
DEBUG actor:402725412 receives from actor:1212714640, file datasets/Iowa_Continuous_Corn/GPIC.1424-4.1371.fastq, 100010000 entries so far
DEBUG Actor 402725412 received from actor 1212714640 for file datasets/Iowa_Continuous_Corn/GPIC.1424-4.1371.fastq: 103720072 entries
DEBUG Actor 402725412 received from actor 721954240 for file datasets/Iowa_Continuous_Corn/GPIC.1425-5.1367.fastq: 103929788 entries
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DEBUG Actor 402725412 received from actor 1630775601 for file datasets/Iowa_Continuous_Corn/GPIC.1425-2.1367.fastq: 109812178 entries
DEBUG spawner 800941600 is on node 0
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DEBUG spawner 1163079153 is on node 1
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DEBUG spawner 139172306 is on node 2
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DEBUG sequence stores are ready (92)
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DEBUG sequence files
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actor:0, 3/42 datasets/Iowa_Continuous_Corn/foo~ 0
actor:0, 4/42 datasets/Iowa_Continuous_Corn/foo.out 0
actor:0, 5/42 datasets/Iowa_Continuous_Corn/GPIC.1424-1.1371.fastq 90613544
actor:0, 6/42 datasets/Iowa_Continuous_Corn/GPIC.1424-2.1371.fastq 99214846
actor:0, 7/42 datasets/Iowa_Continuous_Corn/GPIC.1424-3.1371.fastq 100163104
actor:0, 8/42 datasets/Iowa_Continuous_Corn/GPIC.1424-4.1371.fastq 103720072
actor:0, 9/42 datasets/Iowa_Continuous_Corn/GPIC.1424-5.1371.fastq 92773918
actor:0, 10/42 datasets/Iowa_Continuous_Corn/GPIC.1424-6.1371.fastq 98895622
actor:0, 11/42 datasets/Iowa_Continuous_Corn/GPIC.1424-7.1371.fastq 101018426
actor:0, 12/42 datasets/Iowa_Continuous_Corn/GPIC.1425-1.1367.fastq 96424282
actor:0, 13/42 datasets/Iowa_Continuous_Corn/GPIC.1425-2.1367.fastq 109812178
actor:0, 14/42 datasets/Iowa_Continuous_Corn/GPIC.1425-3.1367.fastq 108708372
actor:0, 15/42 datasets/Iowa_Continuous_Corn/GPIC.1425-4.1367.fastq 104209684
actor:0, 16/42 datasets/Iowa_Continuous_Corn/GPIC.1425-5.1367.fastq 103929788
actor:0, 17/42 datasets/Iowa_Continuous_Corn/GPIC.1425-6.1367.fastq 104474188
actor:0, 18/42 datasets/Iowa_Continuous_Corn/GPIC.1425-7.1367.fastq 102182450
actor:0, 19/42 datasets/Iowa_Continuous_Corn/GPIC.649-4.899.fastq 54662170
actor:0, 20/42 datasets/Iowa_Continuous_Corn/GPIC.868-1.1053.fastq 63471812
actor:0, 21/42 datasets/Iowa_Continuous_Corn/GPIC.868-2.1053.fastq 62794138
actor:0, 22/42 datasets/Iowa_Continuous_Corn/GPIC.868-3.1053.fastq 62814332
actor:0, 23/42 datasets/Iowa_Continuous_Corn/GPIC.868-4.1053.fastq 62313864
actor:0, 24/42 datasets/Iowa_Continuous_Corn/GPIC.868-5.1053.fastq 62681112
actor:0, 25/42 datasets/Iowa_Continuous_Corn/GPIC.868-6.1053.fastq 62568148
actor:0, 26/42 datasets/Iowa_Continuous_Corn/GPIC.895-5.1070.fastq 56963934
actor:0, 27/42 datasets/Iowa_Continuous_Corn/GPIC.895-6.1070.fastq 56909532
actor:0, 28/42 datasets/Iowa_Continuous_Corn/GPIC.895-7.1070.fastq 57067668
actor:0, 29/42 datasets/Iowa_Continuous_Corn/HTHO.1209-1.1231.fastq 47646564
actor:0, 30/42 datasets/Iowa_Continuous_Corn/HTHO.1209-2.1231.fastq 51802070
actor:0, 31/42 datasets/Iowa_Continuous_Corn/HTHO.1300-6.1364.fastq 39704380
actor:0, 32/42 datasets/Iowa_Continuous_Corn/HTHO.1429-2.1388.fastq 70800844
actor:0, 33/42 datasets/Iowa_Continuous_Corn/index.html 0
actor:0, 34/42 datasets/Iowa_Continuous_Corn/index.html?C=D;O=A 0
actor:0, 35/42 datasets/Iowa_Continuous_Corn/index.html?C=D;O=D 0
actor:0, 36/42 datasets/Iowa_Continuous_Corn/index.html?C=M;O=A 0
actor:0, 37/42 datasets/Iowa_Continuous_Corn/index.html?C=M;O=D 0
actor:0, 38/42 datasets/Iowa_Continuous_Corn/index.html?C=N;O=A 0
actor:0, 39/42 datasets/Iowa_Continuous_Corn/index.html?C=N;O=D 0
actor:0, 40/42 datasets/Iowa_Continuous_Corn/index.html?C=S;O=A 0
actor:0, 41/42 datasets/Iowa_Continuous_Corn/index.html?C=S;O=D 0
DEBUG Partition Total: 2228341042, block_size: 4096, blocks: 544029
DEBUG Stores: 92, Blocks per store: 5913, entries per store: 24221098
Actor 800941600 is notified by actor 402725412 that the distribution is complete
actor 800941600 stops all other actors
----------------------------------------------
biosal> Counters for node/1
BSAL_COUNTER_SPAWNED_ACTORS 36
BSAL_COUNTER_KILLED_ACTORS 36
 balance BSAL_COUNTER_BALANCE_ACTORS 0
BSAL_COUNTER_RECEIVED_MESSAGES 1141458
  BSAL_COUNTER_RECEIVED_MESSAGES_FROM_SELF 1141368
  BSAL_COUNTER_RECEIVED_MESSAGES_NOT_FROM_SELF 90
BSAL_COUNTER_SENT_MESSAGES 1712114
  BSAL_COUNTER_SENT_MESSAGES_TO_SELF 1141368
  BSAL_COUNTER_SENT_MESSAGES_NOT_TO_SELF 570746
 balance BSAL_COUNTER_BALANCE_MESSAGES -570656
BSAL_COUNTER_RECEIVED_BYTES 699
  BSAL_COUNTER_RECEIVED_BYTES_FROM_SELF 24
  BSAL_COUNTER_RECEIVED_BYTES_NOT_FROM_SELF 675
BSAL_COUNTER_SENT_BYTES 2282996
  BSAL_COUNTER_SENT_BYTES_TO_SELF 24
 BSAL_COUNTER_SENT_BYTES_NOT_TO_SELF 2282972
 balance BSAL_COUNTER_BALANCE_BYTES -2282297
----------------------------------------------
biosal> Counters for node/0
BSAL_COUNTER_SPAWNED_ACTORS 37
BSAL_COUNTER_KILLED_ACTORS 37
 balance BSAL_COUNTER_BALANCE_ACTORS 0
BSAL_COUNTER_RECEIVED_MESSAGES 3345107
  BSAL_COUNTER_RECEIVED_MESSAGES_FROM_SELF 1674677
  BSAL_COUNTER_RECEIVED_MESSAGES_NOT_FROM_SELF 1670430
BSAL_COUNTER_SENT_MESSAGES 1674943
  BSAL_COUNTER_SENT_MESSAGES_TO_SELF 1674677
  BSAL_COUNTER_SENT_MESSAGES_NOT_TO_SELF 266
 balance BSAL_COUNTER_BALANCE_MESSAGES 1670164
BSAL_COUNTER_RECEIVED_BYTES 8917076
  BSAL_COUNTER_RECEIVED_BYTES_FROM_SELF 2235392
  BSAL_COUNTER_RECEIVED_BYTES_NOT_FROM_SELF 6681684
BSAL_COUNTER_SENT_BYTES 2237388
  BSAL_COUNTER_SENT_BYTES_TO_SELF 2235392
 BSAL_COUNTER_SENT_BYTES_NOT_TO_SELF 1996
 balance BSAL_COUNTER_BALANCE_BYTES 6679688
----------------------------------------------
biosal> Counters for node/2
BSAL_COUNTER_SPAWNED_ACTORS 35
BSAL_COUNTER_KILLED_ACTORS 35
 balance BSAL_COUNTER_BALANCE_ACTORS 0
BSAL_COUNTER_RECEIVED_MESSAGES 1161252
  BSAL_COUNTER_RECEIVED_MESSAGES_FROM_SELF 1161164
  BSAL_COUNTER_RECEIVED_MESSAGES_NOT_FROM_SELF 88
BSAL_COUNTER_SENT_MESSAGES 1741806
  BSAL_COUNTER_SENT_MESSAGES_TO_SELF 1161164
  BSAL_COUNTER_SENT_MESSAGES_NOT_TO_SELF 580642
 balance BSAL_COUNTER_BALANCE_MESSAGES -580554
BSAL_COUNTER_RECEIVED_BYTES 685
  BSAL_COUNTER_RECEIVED_BYTES_FROM_SELF 24
  BSAL_COUNTER_RECEIVED_BYTES_NOT_FROM_SELF 661
BSAL_COUNTER_SENT_BYTES 2322580
  BSAL_COUNTER_SENT_BYTES_TO_SELF 24
 BSAL_COUNTER_SENT_BYTES_NOT_TO_SELF 2322556
 balance BSAL_COUNTER_BALANCE_BYTES -2321895
----------------------------------------------
biosal> Counters for node/3
BSAL_COUNTER_SPAWNED_ACTORS 35
BSAL_COUNTER_KILLED_ACTORS 35
 balance BSAL_COUNTER_BALANCE_ACTORS 0
BSAL_COUNTER_RECEIVED_MESSAGES 1038052
  BSAL_COUNTER_RECEIVED_MESSAGES_FROM_SELF 1037964
  BSAL_COUNTER_RECEIVED_MESSAGES_NOT_FROM_SELF 88
BSAL_COUNTER_SENT_MESSAGES 1557006
  BSAL_COUNTER_SENT_MESSAGES_TO_SELF 1037964
  BSAL_COUNTER_SENT_MESSAGES_NOT_TO_SELF 519042
 balance BSAL_COUNTER_BALANCE_MESSAGES -518954
BSAL_COUNTER_RECEIVED_BYTES 684
  BSAL_COUNTER_RECEIVED_BYTES_FROM_SELF 24
  BSAL_COUNTER_RECEIVED_BYTES_NOT_FROM_SELF 660
BSAL_COUNTER_SENT_BYTES 2076180
  BSAL_COUNTER_SENT_BYTES_TO_SELF 24
 BSAL_COUNTER_SENT_BYTES_NOT_TO_SELF 2076156
 balance BSAL_COUNTER_BALANCE_BYTES -2075496
Application 4642195 resources: utime ~17998s, stime ~927s, Rss ~60224, inblocks ~984147715, outblocks ~50517

 ############################################################################
 #                  Job ID: 2716005  Project: CI-#########                  #
 #                  End time: Sat Jun  7 23:04:07 CDT 2014                  #
 #                             Resources Used:                              #
 #         cput=00:00:00,mem=5828kb,vmem=130864kb,walltime=00:03:39         #
 ############################# Beagle Job End ###############################



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