Early prototype of our work with actors for genomics

-
Our work on biosal (bsal) is advancing well.

Here is an example of what you can do easily with the actor model.
This actor machine emulator contains 4 biosal nodes, each with 24 threads and 23 workers (23 worker threads and 1 communication thread). The actor machine executes actors, and the behavior of actor is specified with scripts (in C 1999).

The command I used on the supercomputer to launch the app:

# 4 physical computers, with a fast interconnect
# 4 bsal nodes
# 24 threads per bsal node

#       -d depth       Depth of each processor (number of threads)
#       -N pes         PEs per node
#       -n width       Number of processors needed

aprun -n 4 -N 1 -d 24 biosal/example_controller -threads-per-node 24 datasets/Iowa_Continuous_Corn/*

This is the standard output. This actor computation ran in 3 minutes, 39 seconds. The nice thing about running an actor computation is that the actor machine can collect easily a lot of metrics. These metrics are displayed at the end of the log.


 ############################# Beagle Job Start #############################
 #                  Job ID: 2716005  Project: CI-###########                  #
 #                 Start time: Sat Jun  7 23:00:28 CDT 2014                 #
 #                       Resources: walltime=04:00:00                       #
 ############################################################################

----------------------------------------------
biosal> node/0: 24 threads, 23 workers
actor 800941600 spawned controller 402725412
actor 800941600, starting controller 402725412
DEBUG bsal_input_controller_prepare_spawners
DEBUG bsal_input_controller_prepare_spawners
DEBUG bsal_input_controller_prepare_spawners
DEBUG bsal_input_controller_prepare_spawners
DEBUG bsal_input_controller_prepare_spawners
DEBUG all spawners are prepared
actor 800941600 add file -threads-per-node to actor 402725412
actor 800941600 add file 24 to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/foo to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/foo~ to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/foo.out to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/GPIC.1424-1.1371.fastq to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/GPIC.1424-2.1371.fastq to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/GPIC.1424-3.1371.fastq to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/GPIC.1424-4.1371.fastq to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/GPIC.1424-5.1371.fastq to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/GPIC.1424-6.1371.fastq to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/GPIC.1424-7.1371.fastq to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/GPIC.1425-1.1367.fastq to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/GPIC.1425-2.1367.fastq to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/GPIC.1425-3.1367.fastq to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/GPIC.1425-4.1367.fastq to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/GPIC.1425-5.1367.fastq to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/GPIC.1425-6.1367.fastq to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/GPIC.1425-7.1367.fastq to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/GPIC.649-4.899.fastq to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/GPIC.868-1.1053.fastq to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/GPIC.868-2.1053.fastq to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/GPIC.868-3.1053.fastq to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/GPIC.868-4.1053.fastq to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/GPIC.868-5.1053.fastq to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/GPIC.868-6.1053.fastq to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/GPIC.895-5.1070.fastq to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/GPIC.895-6.1070.fastq to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/GPIC.895-7.1070.fastq to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/HTHO.1209-1.1231.fastq to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/HTHO.1209-2.1231.fastq to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/HTHO.1300-6.1364.fastq to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/HTHO.1429-2.1388.fastq to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/index.html to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/index.html?C=D;O=A to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/index.html?C=D;O=D to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/index.html?C=M;O=A to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/index.html?C=M;O=D to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/index.html?C=N;O=A to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/index.html?C=N;O=D to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/index.html?C=S;O=A to actor 402725412
actor 800941600 add file datasets/Iowa_Continuous_Corn/index.html?C=S;O=D to actor 402725412
actor 800941600 no more files to add
actor 800941600 asks actor 402725412 to distribute data
DEBUG actor 402725412 receives stream 1392161576 from spawner 800941600 for file -threads-per-node
----------------------------------------------
biosal> node/2: 24 threads, 23 workers
DEBUG actor 402725412 receives stream 1162079149 from spawner 1163079153 for file 24
DEBUG actor 402725412 receives stream 34225682 from spawner 139172306 for file datasets/Iowa_Continuous_Corn/foo
DEBUG actor 402725412 receives stream 1399876531 from spawner 1114128863 for file datasets/Iowa_Continuous_Corn/foo~
DEBUG actor 402725412 receives stream 148429560 from spawner 800941600 for file datasets/Iowa_Continuous_Corn/foo.out
----------------------------------------------
biosal> node/3: 24 threads, 23 workers
----------------------------------------------
biosal> node/1: 24 threads, 23 workers
DEBUG actor 402725412 receives stream 680978333 from spawner 1163079153 for file datasets/Iowa_Continuous_Corn/GPIC.1424-1.1371.fastq
DEBUG actor 402725412 receives stream 649752862 from spawner 139172306 for file datasets/Iowa_Continuous_Corn/GPIC.1424-2.1371.fastq
DEBUG actor 402725412 receives stream 122779715 from spawner 1114128863 for file datasets/Iowa_Continuous_Corn/GPIC.1424-3.1371.fastq
DEBUG actor 402725412 receives stream 1212714640 from spawner 800941600 for file datasets/Iowa_Continuous_Corn/GPIC.1424-4.1371.fastq
DEBUG actor 402725412 receives stream 1830160613 from spawner 1163079153 for file datasets/Iowa_Continuous_Corn/GPIC.1424-5.1371.fastq
DEBUG actor 402725412 receives stream 1144056826 from spawner 139172306 for file datasets/Iowa_Continuous_Corn/GPIC.1424-6.1371.fastq
DEBUG actor 402725412 receives stream 1288734375 from spawner 1114128863 for file datasets/Iowa_Continuous_Corn/GPIC.1424-7.1371.fastq
DEBUG actor 402725412 receives stream 547646904 from spawner 800941600 for file datasets/Iowa_Continuous_Corn/GPIC.1425-1.1367.fastq
DEBUG actor 402725412 receives stream 1630775601 from spawner 1163079153 for file datasets/Iowa_Continuous_Corn/GPIC.1425-2.1367.fastq
DEBUG actor 402725412 receives stream 602765326 from spawner 139172306 for file datasets/Iowa_Continuous_Corn/GPIC.1425-3.1367.fastq
DEBUG actor 402725412 receives stream 1882977711 from spawner 1114128863 for file datasets/Iowa_Continuous_Corn/GPIC.1425-4.1367.fastq
DEBUG actor 402725412 receives stream 721954240 from spawner 800941600 for file datasets/Iowa_Continuous_Corn/GPIC.1425-5.1367.fastq
DEBUG actor 402725412 receives stream 261732057 from spawner 1163079153 for file datasets/Iowa_Continuous_Corn/GPIC.1425-6.1367.fastq
DEBUG actor 402725412 receives stream 675296634 from spawner 139172306 for file datasets/Iowa_Continuous_Corn/GPIC.1425-7.1367.fastq
DEBUG actor 402725412 receives stream 468223423 from spawner 1114128863 for file datasets/Iowa_Continuous_Corn/GPIC.649-4.899.fastq
DEBUG actor 402725412 receives stream 94072032 from spawner 800941600 for file datasets/Iowa_Continuous_Corn/GPIC.868-1.1053.fastq
DEBUG actor 402725412 receives stream 609867641 from spawner 1163079153 for file datasets/Iowa_Continuous_Corn/GPIC.868-2.1053.fastq
DEBUG actor 402725412 receives stream 269542554 from spawner 139172306 for file datasets/Iowa_Continuous_Corn/GPIC.868-3.1053.fastq
DEBUG actor 402725412 receives stream 780701627 from spawner 1114128863 for file datasets/Iowa_Continuous_Corn/GPIC.868-4.1053.fastq
DEBUG actor 402725412 receives stream 920849820 from spawner 800941600 for file datasets/Iowa_Continuous_Corn/GPIC.868-5.1053.fastq
DEBUG actor 402725412 receives stream 572359065 from spawner 1163079153 for file datasets/Iowa_Continuous_Corn/GPIC.868-6.1053.fastq
DEBUG actor 402725412 receives stream 257301510 from spawner 139172306 for file datasets/Iowa_Continuous_Corn/GPIC.895-5.1070.fastq
DEBUG actor 402725412 receives stream 1823817815 from spawner 1114128863 for file datasets/Iowa_Continuous_Corn/GPIC.895-6.1070.fastq
DEBUG actor 402725412 receives stream 70674448 from spawner 800941600 for file datasets/Iowa_Continuous_Corn/GPIC.895-7.1070.fastq
DEBUG actor 402725412 receives stream 1774246797 from spawner 1163079153 for file datasets/Iowa_Continuous_Corn/HTHO.1209-1.1231.fastq
DEBUG actor 402725412 receives stream 1044554942 from spawner 139172306 for file datasets/Iowa_Continuous_Corn/HTHO.1209-2.1231.fastq
DEBUG actor 402725412 receives stream 696392135 from spawner 1114128863 for file datasets/Iowa_Continuous_Corn/HTHO.1300-6.1364.fastq
DEBUG actor 402725412 receives stream 363590824 from spawner 800941600 for file datasets/Iowa_Continuous_Corn/HTHO.1429-2.1388.fastq
DEBUG actor 402725412 receives stream 454036081 from spawner 1163079153 for file datasets/Iowa_Continuous_Corn/index.html
DEBUG actor 402725412 receives stream 746596374 from spawner 139172306 for file datasets/Iowa_Continuous_Corn/index.html?C=D;O=A
DEBUG actor 402725412 receives stream 716706071 from spawner 1114128863 for file datasets/Iowa_Continuous_Corn/index.html?C=D;O=D
DEBUG actor 402725412 receives stream 575385800 from spawner 800941600 for file datasets/Iowa_Continuous_Corn/index.html?C=M;O=A
DEBUG actor 402725412 receives stream 1079327317 from spawner 1163079153 for file datasets/Iowa_Continuous_Corn/index.html?C=M;O=D
DEBUG actor 402725412 receives stream 503721090 from spawner 139172306 for file datasets/Iowa_Continuous_Corn/index.html?C=N;O=A
DEBUG actor 402725412 receives stream 218874463 from spawner 1114128863 for file datasets/Iowa_Continuous_Corn/index.html?C=N;O=D
DEBUG actor 402725412 receives stream 1718717096 from spawner 800941600 for file datasets/Iowa_Continuous_Corn/index.html?C=S;O=A
DEBUG actor 402725412 receives stream 1847021925 from spawner 1163079153 for file datasets/Iowa_Continuous_Corn/index.html?C=S;O=D
DEBUG actor:402725412 receives from actor:602765326, file datasets/Iowa_Continuous_Corn/GPIC.1425-3.1367.fastq, 10001000 entries so far
DEBUG actor:402725412 receives from actor:649752862, file datasets/Iowa_Continuous_Corn/GPIC.1424-2.1371.fastq, 10001000 entries so far
DEBUG actor:402725412 receives from actor:675296634, file datasets/Iowa_Continuous_Corn/GPIC.1425-7.1367.fastq, 10002000 entries so far
DEBUG actor:402725412 receives from actor:1144056826, file datasets/Iowa_Continuous_Corn/GPIC.1424-6.1371.fastq, 10001000 entries so far
DEBUG actor:402725412 receives from actor:269542554, file datasets/Iowa_Continuous_Corn/GPIC.868-3.1053.fastq, 10001000 entries so far
DEBUG actor:402725412 receives from actor:257301510, file datasets/Iowa_Continuous_Corn/GPIC.895-5.1070.fastq, 10001000 entries so far
DEBUG actor:402725412 receives from actor:1044554942, file datasets/Iowa_Continuous_Corn/HTHO.1209-2.1231.fastq, 10001000 entries so far
DEBUG actor:402725412 receives from actor:122779715, file datasets/Iowa_Continuous_Corn/GPIC.1424-3.1371.fastq, 10001000 entries so far
DEBUG actor:402725412 receives from actor:1288734375, file datasets/Iowa_Continuous_Corn/GPIC.1424-7.1371.fastq, 10001000 entries so far
DEBUG actor:402725412 receives from actor:1882977711, file datasets/Iowa_Continuous_Corn/GPIC.1425-4.1367.fastq, 10001000 entries so far
DEBUG actor:402725412 receives from actor:780701627, file datasets/Iowa_Continuous_Corn/GPIC.868-4.1053.fastq, 10001000 entries so far
DEBUG actor:402725412 receives from actor:1823817815, file datasets/Iowa_Continuous_Corn/GPIC.895-6.1070.fastq, 10001000 entries so far
DEBUG actor:402725412 receives from actor:468223423, file datasets/Iowa_Continuous_Corn/GPIC.649-4.899.fastq, 10001000 entries so far
DEBUG actor:402725412 receives from actor:696392135, file datasets/Iowa_Continuous_Corn/HTHO.1300-6.1364.fastq, 10001000 entries so far
DEBUG actor:402725412 receives from actor:1830160613, file datasets/Iowa_Continuous_Corn/GPIC.1424-5.1371.fastq, 10001000 entries so far
DEBUG actor:402725412 receives from actor:680978333, file datasets/Iowa_Continuous_Corn/GPIC.1424-1.1371.fastq, 10001000 entries so far
DEBUG actor:402725412 receives from actor:261732057, file datasets/Iowa_Continuous_Corn/GPIC.1425-6.1367.fastq, 10001000 entries so far
DEBUG actor:402725412 receives from actor:1630775601, file datasets/Iowa_Continuous_Corn/GPIC.1425-2.1367.fastq, 10001000 entries so far
DEBUG actor:402725412 receives from actor:609867641, file datasets/Iowa_Continuous_Corn/GPIC.868-2.1053.fastq, 10001000 entries so far
DEBUG actor:402725412 receives from actor:1774246797, file datasets/Iowa_Continuous_Corn/HTHO.1209-1.1231.fastq, 10001000 entries so far
DEBUG actor:402725412 receives from actor:572359065, file datasets/Iowa_Continuous_Corn/GPIC.868-6.1053.fastq, 10001000 entries so far
DEBUG actor:402725412 receives from actor:721954240, file datasets/Iowa_Continuous_Corn/GPIC.1425-5.1367.fastq, 10001000 entries so far
DEBUG actor:402725412 receives from actor:1212714640, file datasets/Iowa_Continuous_Corn/GPIC.1424-4.1371.fastq, 10001000 entries so far
DEBUG actor:402725412 receives from actor:547646904, file datasets/Iowa_Continuous_Corn/GPIC.1425-1.1367.fastq, 10001000 entries so far
DEBUG actor:402725412 receives from actor:920849820, file datasets/Iowa_Continuous_Corn/GPIC.868-5.1053.fastq, 10001000 entries so far
DEBUG actor:402725412 receives from actor:94072032, file datasets/Iowa_Continuous_Corn/GPIC.868-1.1053.fastq, 10001000 entries so far
DEBUG actor:402725412 receives from actor:70674448, file datasets/Iowa_Continuous_Corn/GPIC.895-7.1070.fastq, 10001000 entries so far
DEBUG actor:402725412 receives from actor:363590824, file datasets/Iowa_Continuous_Corn/HTHO.1429-2.1388.fastq, 10001000 entries so far
DEBUG actor:402725412 receives from actor:1288734375, file datasets/Iowa_Continuous_Corn/GPIC.1424-7.1371.fastq, 20002000 entries so far
DEBUG actor:402725412 receives from actor:122779715, file datasets/Iowa_Continuous_Corn/GPIC.1424-3.1371.fastq, 20002000 entries so far
DEBUG actor:402725412 receives from actor:1882977711, file datasets/Iowa_Continuous_Corn/GPIC.1425-4.1367.fastq, 20002000 entries so far
DEBUG actor:402725412 receives from actor:1823817815, file datasets/Iowa_Continuous_Corn/GPIC.895-6.1070.fastq, 20002000 entries so far
DEBUG actor:402725412 receives from actor:780701627, file datasets/Iowa_Continuous_Corn/GPIC.868-4.1053.fastq, 20002000 entries so far
DEBUG actor:402725412 receives from actor:468223423, file datasets/Iowa_Continuous_Corn/GPIC.649-4.899.fastq, 20002000 entries so far
DEBUG actor:402725412 receives from actor:696392135, file datasets/Iowa_Continuous_Corn/HTHO.1300-6.1364.fastq, 20002000 entries so far
DEBUG actor:402725412 receives from actor:602765326, file datasets/Iowa_Continuous_Corn/GPIC.1425-3.1367.fastq, 20002000 entries so far
DEBUG actor:402725412 receives from actor:649752862, file datasets/Iowa_Continuous_Corn/GPIC.1424-2.1371.fastq, 20002000 entries so far
DEBUG actor:402725412 receives from actor:1144056826, file datasets/Iowa_Continuous_Corn/GPIC.1424-6.1371.fastq, 20002000 entries so far
DEBUG actor:402725412 receives from actor:269542554, file datasets/Iowa_Continuous_Corn/GPIC.868-3.1053.fastq, 20002000 entries so far
DEBUG actor:402725412 receives from actor:675296634, file datasets/Iowa_Continuous_Corn/GPIC.1425-7.1367.fastq, 20004000 entries so far
DEBUG actor:402725412 receives from actor:257301510, file datasets/Iowa_Continuous_Corn/GPIC.895-5.1070.fastq, 20002000 entries so far
DEBUG actor:402725412 receives from actor:1044554942, file datasets/Iowa_Continuous_Corn/HTHO.1209-2.1231.fastq, 20002000 entries so far
DEBUG actor:402725412 receives from actor:261732057, file datasets/Iowa_Continuous_Corn/GPIC.1425-6.1367.fastq, 20002000 entries so far
DEBUG actor:402725412 receives from actor:680978333, file datasets/Iowa_Continuous_Corn/GPIC.1424-1.1371.fastq, 20003000 entries so far
DEBUG actor:402725412 receives from actor:1830160613, file datasets/Iowa_Continuous_Corn/GPIC.1424-5.1371.fastq, 20002000 entries so far
DEBUG actor:402725412 receives from actor:1630775601, file datasets/Iowa_Continuous_Corn/GPIC.1425-2.1367.fastq, 20002000 entries so far
DEBUG actor:402725412 receives from actor:609867641, file datasets/Iowa_Continuous_Corn/GPIC.868-2.1053.fastq, 20003000 entries so far
DEBUG actor:402725412 receives from actor:1774246797, file datasets/Iowa_Continuous_Corn/HTHO.1209-1.1231.fastq, 20002000 entries so far
DEBUG actor:402725412 receives from actor:572359065, file datasets/Iowa_Continuous_Corn/GPIC.868-6.1053.fastq, 20003000 entries so far
DEBUG actor:402725412 receives from actor:1212714640, file datasets/Iowa_Continuous_Corn/GPIC.1424-4.1371.fastq, 20002000 entries so far
DEBUG actor:402725412 receives from actor:721954240, file datasets/Iowa_Continuous_Corn/GPIC.1425-5.1367.fastq, 20002000 entries so far
DEBUG actor:402725412 receives from actor:547646904, file datasets/Iowa_Continuous_Corn/GPIC.1425-1.1367.fastq, 20002000 entries so far
DEBUG actor:402725412 receives from actor:920849820, file datasets/Iowa_Continuous_Corn/GPIC.868-5.1053.fastq, 20002000 entries so far
DEBUG actor:402725412 receives from actor:94072032, file datasets/Iowa_Continuous_Corn/GPIC.868-1.1053.fastq, 20002000 entries so far
DEBUG actor:402725412 receives from actor:70674448, file datasets/Iowa_Continuous_Corn/GPIC.895-7.1070.fastq, 20002000 entries so far
DEBUG actor:402725412 receives from actor:363590824, file datasets/Iowa_Continuous_Corn/HTHO.1429-2.1388.fastq, 20002000 entries so far
DEBUG actor:402725412 receives from actor:602765326, file datasets/Iowa_Continuous_Corn/GPIC.1425-3.1367.fastq, 30003000 entries so far
DEBUG actor:402725412 receives from actor:649752862, file datasets/Iowa_Continuous_Corn/GPIC.1424-2.1371.fastq, 30003000 entries so far
DEBUG actor:402725412 receives from actor:269542554, file datasets/Iowa_Continuous_Corn/GPIC.868-3.1053.fastq, 30003000 entries so far
DEBUG actor:402725412 receives from actor:675296634, file datasets/Iowa_Continuous_Corn/GPIC.1425-7.1367.fastq, 30005000 entries so far
DEBUG actor:402725412 receives from actor:257301510, file datasets/Iowa_Continuous_Corn/GPIC.895-5.1070.fastq, 30003000 entries so far
DEBUG actor:402725412 receives from actor:1144056826, file datasets/Iowa_Continuous_Corn/GPIC.1424-6.1371.fastq, 30003000 entries so far
DEBUG actor:402725412 receives from actor:1044554942, file datasets/Iowa_Continuous_Corn/HTHO.1209-2.1231.fastq, 30003000 entries so far
DEBUG actor:402725412 receives from actor:122779715, file datasets/Iowa_Continuous_Corn/GPIC.1424-3.1371.fastq, 30004000 entries so far
DEBUG actor:402725412 receives from actor:1882977711, file datasets/Iowa_Continuous_Corn/GPIC.1425-4.1367.fastq, 30004000 entries so far
DEBUG actor:402725412 receives from actor:1288734375, file datasets/Iowa_Continuous_Corn/GPIC.1424-7.1371.fastq, 30003000 entries so far
DEBUG actor:402725412 receives from actor:780701627, file datasets/Iowa_Continuous_Corn/GPIC.868-4.1053.fastq, 30003000 entries so far
DEBUG actor:402725412 receives from actor:1823817815, file datasets/Iowa_Continuous_Corn/GPIC.895-6.1070.fastq, 30003000 entries so far
DEBUG actor:402725412 receives from actor:468223423, file datasets/Iowa_Continuous_Corn/GPIC.649-4.899.fastq, 30003000 entries so far
DEBUG actor:402725412 receives from actor:696392135, file datasets/Iowa_Continuous_Corn/HTHO.1300-6.1364.fastq, 30003000 entries so far
DEBUG actor:402725412 receives from actor:547646904, file datasets/Iowa_Continuous_Corn/GPIC.1425-1.1367.fastq, 30003000 entries so far
DEBUG actor:402725412 receives from actor:1212714640, file datasets/Iowa_Continuous_Corn/GPIC.1424-4.1371.fastq, 30003000 entries so far
DEBUG actor:402725412 receives from actor:721954240, file datasets/Iowa_Continuous_Corn/GPIC.1425-5.1367.fastq, 30003000 entries so far
DEBUG actor:402725412 receives from actor:920849820, file datasets/Iowa_Continuous_Corn/GPIC.868-5.1053.fastq, 30003000 entries so far
DEBUG actor:402725412 receives from actor:94072032, file datasets/Iowa_Continuous_Corn/GPIC.868-1.1053.fastq, 30003000 entries so far
DEBUG actor:402725412 receives from actor:70674448, file datasets/Iowa_Continuous_Corn/GPIC.895-7.1070.fastq, 30003000 entries so far
DEBUG actor:402725412 receives from actor:363590824, file datasets/Iowa_Continuous_Corn/HTHO.1429-2.1388.fastq, 30003000 entries so far
DEBUG actor:402725412 receives from actor:1830160613, file datasets/Iowa_Continuous_Corn/GPIC.1424-5.1371.fastq, 30003000 entries so far
DEBUG actor:402725412 receives from actor:1630775601, file datasets/Iowa_Continuous_Corn/GPIC.1425-2.1367.fastq, 30003000 entries so far
DEBUG actor:402725412 receives from actor:261732057, file datasets/Iowa_Continuous_Corn/GPIC.1425-6.1367.fastq, 30003000 entries so far
DEBUG actor:402725412 receives from actor:680978333, file datasets/Iowa_Continuous_Corn/GPIC.1424-1.1371.fastq, 30004000 entries so far
DEBUG actor:402725412 receives from actor:609867641, file datasets/Iowa_Continuous_Corn/GPIC.868-2.1053.fastq, 30005000 entries so far
DEBUG actor:402725412 receives from actor:1774246797, file datasets/Iowa_Continuous_Corn/HTHO.1209-1.1231.fastq, 30003000 entries so far
DEBUG actor:402725412 receives from actor:572359065, file datasets/Iowa_Continuous_Corn/GPIC.868-6.1053.fastq, 30004000 entries so far
DEBUG actor:402725412 receives from actor:602765326, file datasets/Iowa_Continuous_Corn/GPIC.1425-3.1367.fastq, 40004000 entries so far
DEBUG actor:402725412 receives from actor:649752862, file datasets/Iowa_Continuous_Corn/GPIC.1424-2.1371.fastq, 40005000 entries so far
DEBUG actor:402725412 receives from actor:269542554, file datasets/Iowa_Continuous_Corn/GPIC.868-3.1053.fastq, 40004000 entries so far
DEBUG actor:402725412 receives from actor:257301510, file datasets/Iowa_Continuous_Corn/GPIC.895-5.1070.fastq, 40004000 entries so far
DEBUG actor:402725412 receives from actor:675296634, file datasets/Iowa_Continuous_Corn/GPIC.1425-7.1367.fastq, 40006000 entries so far
DEBUG actor:402725412 receives from actor:1144056826, file datasets/Iowa_Continuous_Corn/GPIC.1424-6.1371.fastq, 40005000 entries so far
DEBUG actor:402725412 receives from actor:1044554942, file datasets/Iowa_Continuous_Corn/HTHO.1209-2.1231.fastq, 40004000 entries so far
DEBUG Actor 402725412 received from actor 696392135 for file datasets/Iowa_Continuous_Corn/HTHO.1300-6.1364.fastq: 39704380 entries
DEBUG actor:402725412 receives from actor:1882977711, file datasets/Iowa_Continuous_Corn/GPIC.1425-4.1367.fastq, 40005000 entries so far
DEBUG actor:402725412 receives from actor:1288734375, file datasets/Iowa_Continuous_Corn/GPIC.1424-7.1371.fastq, 40004000 entries so far
DEBUG actor:402725412 receives from actor:122779715, file datasets/Iowa_Continuous_Corn/GPIC.1424-3.1371.fastq, 40005000 entries so far
DEBUG actor:402725412 receives from actor:780701627, file datasets/Iowa_Continuous_Corn/GPIC.868-4.1053.fastq, 40004000 entries so far
DEBUG actor:402725412 receives from actor:1823817815, file datasets/Iowa_Continuous_Corn/GPIC.895-6.1070.fastq, 40004000 entries so far
DEBUG actor:402725412 receives from actor:468223423, file datasets/Iowa_Continuous_Corn/GPIC.649-4.899.fastq, 40004000 entries so far
DEBUG actor:402725412 receives from actor:261732057, file datasets/Iowa_Continuous_Corn/GPIC.1425-6.1367.fastq, 40004000 entries so far
DEBUG actor:402725412 receives from actor:680978333, file datasets/Iowa_Continuous_Corn/GPIC.1424-1.1371.fastq, 40005000 entries so far
DEBUG actor:402725412 receives from actor:1830160613, file datasets/Iowa_Continuous_Corn/GPIC.1424-5.1371.fastq, 40004000 entries so far
DEBUG actor:402725412 receives from actor:1630775601, file datasets/Iowa_Continuous_Corn/GPIC.1425-2.1367.fastq, 40004000 entries so far
DEBUG actor:402725412 receives from actor:609867641, file datasets/Iowa_Continuous_Corn/GPIC.868-2.1053.fastq, 40006000 entries so far
DEBUG actor:402725412 receives from actor:1774246797, file datasets/Iowa_Continuous_Corn/HTHO.1209-1.1231.fastq, 40004000 entries so far
DEBUG actor:402725412 receives from actor:572359065, file datasets/Iowa_Continuous_Corn/GPIC.868-6.1053.fastq, 40005000 entries so far
DEBUG actor:402725412 receives from actor:1212714640, file datasets/Iowa_Continuous_Corn/GPIC.1424-4.1371.fastq, 40004000 entries so far
DEBUG actor:402725412 receives from actor:721954240, file datasets/Iowa_Continuous_Corn/GPIC.1425-5.1367.fastq, 40004000 entries so far
DEBUG actor:402725412 receives from actor:547646904, file datasets/Iowa_Continuous_Corn/GPIC.1425-1.1367.fastq, 40004000 entries so far
DEBUG actor:402725412 receives from actor:920849820, file datasets/Iowa_Continuous_Corn/GPIC.868-5.1053.fastq, 40004000 entries so far
DEBUG actor:402725412 receives from actor:94072032, file datasets/Iowa_Continuous_Corn/GPIC.868-1.1053.fastq, 40004000 entries so far
DEBUG actor:402725412 receives from actor:70674448, file datasets/Iowa_Continuous_Corn/GPIC.895-7.1070.fastq, 40004000 entries so far
DEBUG actor:402725412 receives from actor:363590824, file datasets/Iowa_Continuous_Corn/HTHO.1429-2.1388.fastq, 40004000 entries so far
DEBUG actor:402725412 receives from actor:602765326, file datasets/Iowa_Continuous_Corn/GPIC.1425-3.1367.fastq, 50005000 entries so far
DEBUG actor:402725412 receives from actor:269542554, file datasets/Iowa_Continuous_Corn/GPIC.868-3.1053.fastq, 50005000 entries so far
DEBUG actor:402725412 receives from actor:649752862, file datasets/Iowa_Continuous_Corn/GPIC.1424-2.1371.fastq, 50006000 entries so far
DEBUG actor:402725412 receives from actor:257301510, file datasets/Iowa_Continuous_Corn/GPIC.895-5.1070.fastq, 50005000 entries so far
DEBUG actor:402725412 receives from actor:675296634, file datasets/Iowa_Continuous_Corn/GPIC.1425-7.1367.fastq, 50007000 entries so far
DEBUG actor:402725412 receives from actor:1144056826, file datasets/Iowa_Continuous_Corn/GPIC.1424-6.1371.fastq, 50007000 entries so far
DEBUG actor:402725412 receives from actor:1044554942, file datasets/Iowa_Continuous_Corn/HTHO.1209-2.1231.fastq, 50005000 entries so far
DEBUG actor:402725412 receives from actor:122779715, file datasets/Iowa_Continuous_Corn/GPIC.1424-3.1371.fastq, 50006000 entries so far
DEBUG actor:402725412 receives from actor:1882977711, file datasets/Iowa_Continuous_Corn/GPIC.1425-4.1367.fastq, 50006000 entries so far
DEBUG actor:402725412 receives from actor:1288734375, file datasets/Iowa_Continuous_Corn/GPIC.1424-7.1371.fastq, 50005000 entries so far
DEBUG actor:402725412 receives from actor:780701627, file datasets/Iowa_Continuous_Corn/GPIC.868-4.1053.fastq, 50005000 entries so far
DEBUG actor:402725412 receives from actor:1823817815, file datasets/Iowa_Continuous_Corn/GPIC.895-6.1070.fastq, 50005000 entries so far
DEBUG actor:402725412 receives from actor:468223423, file datasets/Iowa_Continuous_Corn/GPIC.649-4.899.fastq, 50005000 entries so far
DEBUG Actor 402725412 received from actor 1774246797 for file datasets/Iowa_Continuous_Corn/HTHO.1209-1.1231.fastq: 47646564 entries
DEBUG Actor 402725412 received from actor 1044554942 for file datasets/Iowa_Continuous_Corn/HTHO.1209-2.1231.fastq: 51802070 entries
DEBUG actor:402725412 receives from actor:1830160613, file datasets/Iowa_Continuous_Corn/GPIC.1424-5.1371.fastq, 50005000 entries so far
DEBUG actor:402725412 receives from actor:1630775601, file datasets/Iowa_Continuous_Corn/GPIC.1425-2.1367.fastq, 50005000 entries so far
DEBUG actor:402725412 receives from actor:261732057, file datasets/Iowa_Continuous_Corn/GPIC.1425-6.1367.fastq, 50005000 entries so far
DEBUG actor:402725412 receives from actor:680978333, file datasets/Iowa_Continuous_Corn/GPIC.1424-1.1371.fastq, 50006000 entries so far
DEBUG actor:402725412 receives from actor:609867641, file datasets/Iowa_Continuous_Corn/GPIC.868-2.1053.fastq, 50007000 entries so far
DEBUG actor:402725412 receives from actor:572359065, file datasets/Iowa_Continuous_Corn/GPIC.868-6.1053.fastq, 50007000 entries so far
DEBUG Actor 402725412 received from actor 468223423 for file datasets/Iowa_Continuous_Corn/GPIC.649-4.899.fastq: 54662170 entries
DEBUG actor:402725412 receives from actor:721954240, file datasets/Iowa_Continuous_Corn/GPIC.1425-5.1367.fastq, 50005000 entries so far
DEBUG actor:402725412 receives from actor:547646904, file datasets/Iowa_Continuous_Corn/GPIC.1425-1.1367.fastq, 50005000 entries so far
DEBUG actor:402725412 receives from actor:1212714640, file datasets/Iowa_Continuous_Corn/GPIC.1424-4.1371.fastq, 50005000 entries so far
DEBUG actor:402725412 receives from actor:94072032, file datasets/Iowa_Continuous_Corn/GPIC.868-1.1053.fastq, 50005000 entries so far
DEBUG actor:402725412 receives from actor:920849820, file datasets/Iowa_Continuous_Corn/GPIC.868-5.1053.fastq, 50005000 entries so far
DEBUG actor:402725412 receives from actor:70674448, file datasets/Iowa_Continuous_Corn/GPIC.895-7.1070.fastq, 50005000 entries so far
DEBUG actor:402725412 receives from actor:363590824, file datasets/Iowa_Continuous_Corn/HTHO.1429-2.1388.fastq, 50005000 entries so far
DEBUG Actor 402725412 received from actor 257301510 for file datasets/Iowa_Continuous_Corn/GPIC.895-5.1070.fastq: 56963934 entries
DEBUG Actor 402725412 received from actor 1823817815 for file datasets/Iowa_Continuous_Corn/GPIC.895-6.1070.fastq: 56909532 entries
DEBUG actor:402725412 receives from actor:602765326, file datasets/Iowa_Continuous_Corn/GPIC.1425-3.1367.fastq, 60006000 entries so far
DEBUG actor:402725412 receives from actor:649752862, file datasets/Iowa_Continuous_Corn/GPIC.1424-2.1371.fastq, 60007000 entries so far
DEBUG actor:402725412 receives from actor:269542554, file datasets/Iowa_Continuous_Corn/GPIC.868-3.1053.fastq, 60006000 entries so far
DEBUG actor:402725412 receives from actor:675296634, file datasets/Iowa_Continuous_Corn/GPIC.1425-7.1367.fastq, 60008000 entries so far
DEBUG actor:402725412 receives from actor:1144056826, file datasets/Iowa_Continuous_Corn/GPIC.1424-6.1371.fastq, 60008000 entries so far
DEBUG actor:402725412 receives from actor:122779715, file datasets/Iowa_Continuous_Corn/GPIC.1424-3.1371.fastq, 60007000 entries so far
DEBUG actor:402725412 receives from actor:1288734375, file datasets/Iowa_Continuous_Corn/GPIC.1424-7.1371.fastq, 60006000 entries so far
DEBUG actor:402725412 receives from actor:1882977711, file datasets/Iowa_Continuous_Corn/GPIC.1425-4.1367.fastq, 60007000 entries so far
DEBUG actor:402725412 receives from actor:780701627, file datasets/Iowa_Continuous_Corn/GPIC.868-4.1053.fastq, 60006000 entries so far
DEBUG Actor 402725412 received from actor 269542554 for file datasets/Iowa_Continuous_Corn/GPIC.868-3.1053.fastq: 62814332 entries
DEBUG Actor 402725412 received from actor 780701627 for file datasets/Iowa_Continuous_Corn/GPIC.868-4.1053.fastq: 62313864 entries
DEBUG Actor 402725412 received from actor 70674448 for file datasets/Iowa_Continuous_Corn/GPIC.895-7.1070.fastq: 57067668 entries
DEBUG actor:402725412 receives from actor:261732057, file datasets/Iowa_Continuous_Corn/GPIC.1425-6.1367.fastq, 60006000 entries so far
DEBUG actor:402725412 receives from actor:680978333, file datasets/Iowa_Continuous_Corn/GPIC.1424-1.1371.fastq, 60007000 entries so far
DEBUG actor:402725412 receives from actor:1630775601, file datasets/Iowa_Continuous_Corn/GPIC.1425-2.1367.fastq, 60006000 entries so far
DEBUG actor:402725412 receives from actor:1830160613, file datasets/Iowa_Continuous_Corn/GPIC.1424-5.1371.fastq, 60007000 entries so far
DEBUG actor:402725412 receives from actor:609867641, file datasets/Iowa_Continuous_Corn/GPIC.868-2.1053.fastq, 60008000 entries so far
DEBUG actor:402725412 receives from actor:572359065, file datasets/Iowa_Continuous_Corn/GPIC.868-6.1053.fastq, 60008000 entries so far
DEBUG actor:402725412 receives from actor:602765326, file datasets/Iowa_Continuous_Corn/GPIC.1425-3.1367.fastq, 70007000 entries so far
DEBUG actor:402725412 receives from actor:649752862, file datasets/Iowa_Continuous_Corn/GPIC.1424-2.1371.fastq, 70008000 entries so far
DEBUG actor:402725412 receives from actor:1144056826, file datasets/Iowa_Continuous_Corn/GPIC.1424-6.1371.fastq, 70009000 entries so far
DEBUG actor:402725412 receives from actor:675296634, file datasets/Iowa_Continuous_Corn/GPIC.1425-7.1367.fastq, 70009000 entries so far
DEBUG Actor 402725412 received from actor 572359065 for file datasets/Iowa_Continuous_Corn/GPIC.868-6.1053.fastq: 62568148 entries
DEBUG Actor 402725412 received from actor 609867641 for file datasets/Iowa_Continuous_Corn/GPIC.868-2.1053.fastq: 62794138 entries
DEBUG actor:402725412 receives from actor:721954240, file datasets/Iowa_Continuous_Corn/GPIC.1425-5.1367.fastq, 60006000 entries so far
DEBUG actor:402725412 receives from actor:1212714640, file datasets/Iowa_Continuous_Corn/GPIC.1424-4.1371.fastq, 60006000 entries so far
DEBUG actor:402725412 receives from actor:547646904, file datasets/Iowa_Continuous_Corn/GPIC.1425-1.1367.fastq, 60006000 entries so far
DEBUG actor:402725412 receives from actor:94072032, file datasets/Iowa_Continuous_Corn/GPIC.868-1.1053.fastq, 60006000 entries so far
DEBUG actor:402725412 receives from actor:920849820, file datasets/Iowa_Continuous_Corn/GPIC.868-5.1053.fastq, 60006000 entries so far
DEBUG actor:402725412 receives from actor:363590824, file datasets/Iowa_Continuous_Corn/HTHO.1429-2.1388.fastq, 60006000 entries so far
DEBUG actor:402725412 receives from actor:1288734375, file datasets/Iowa_Continuous_Corn/GPIC.1424-7.1371.fastq, 70007000 entries so far
DEBUG actor:402725412 receives from actor:122779715, file datasets/Iowa_Continuous_Corn/GPIC.1424-3.1371.fastq, 70008000 entries so far
DEBUG actor:402725412 receives from actor:1882977711, file datasets/Iowa_Continuous_Corn/GPIC.1425-4.1367.fastq, 70008000 entries so far
DEBUG Actor 402725412 received from actor 920849820 for file datasets/Iowa_Continuous_Corn/GPIC.868-5.1053.fastq: 62681112 entries
DEBUG Actor 402725412 received from actor 94072032 for file datasets/Iowa_Continuous_Corn/GPIC.868-1.1053.fastq: 63471812 entries
DEBUG actor:402725412 receives from actor:261732057, file datasets/Iowa_Continuous_Corn/GPIC.1425-6.1367.fastq, 70007000 entries so far
DEBUG actor:402725412 receives from actor:680978333, file datasets/Iowa_Continuous_Corn/GPIC.1424-1.1371.fastq, 70008000 entries so far
DEBUG actor:402725412 receives from actor:1630775601, file datasets/Iowa_Continuous_Corn/GPIC.1425-2.1367.fastq, 70007000 entries so far
DEBUG actor:402725412 receives from actor:1830160613, file datasets/Iowa_Continuous_Corn/GPIC.1424-5.1371.fastq, 70008000 entries so far
DEBUG actor:402725412 receives from actor:649752862, file datasets/Iowa_Continuous_Corn/GPIC.1424-2.1371.fastq, 80009000 entries so far
DEBUG actor:402725412 receives from actor:602765326, file datasets/Iowa_Continuous_Corn/GPIC.1425-3.1367.fastq, 80008000 entries so far
DEBUG actor:402725412 receives from actor:1144056826, file datasets/Iowa_Continuous_Corn/GPIC.1424-6.1371.fastq, 80010000 entries so far
DEBUG actor:402725412 receives from actor:675296634, file datasets/Iowa_Continuous_Corn/GPIC.1425-7.1367.fastq, 80011000 entries so far
DEBUG actor:402725412 receives from actor:122779715, file datasets/Iowa_Continuous_Corn/GPIC.1424-3.1371.fastq, 80009000 entries so far
DEBUG actor:402725412 receives from actor:1288734375, file datasets/Iowa_Continuous_Corn/GPIC.1424-7.1371.fastq, 80008000 entries so far
DEBUG actor:402725412 receives from actor:1882977711, file datasets/Iowa_Continuous_Corn/GPIC.1425-4.1367.fastq, 80009000 entries so far
DEBUG actor:402725412 receives from actor:721954240, file datasets/Iowa_Continuous_Corn/GPIC.1425-5.1367.fastq, 70007000 entries so far
DEBUG actor:402725412 receives from actor:547646904, file datasets/Iowa_Continuous_Corn/GPIC.1425-1.1367.fastq, 70007000 entries so far
DEBUG actor:402725412 receives from actor:1212714640, file datasets/Iowa_Continuous_Corn/GPIC.1424-4.1371.fastq, 70007000 entries so far
DEBUG actor:402725412 receives from actor:363590824, file datasets/Iowa_Continuous_Corn/HTHO.1429-2.1388.fastq, 70007000 entries so far
DEBUG Actor 402725412 received from actor 363590824 for file datasets/Iowa_Continuous_Corn/HTHO.1429-2.1388.fastq: 70800844 entries
DEBUG actor:402725412 receives from actor:1288734375, file datasets/Iowa_Continuous_Corn/GPIC.1424-7.1371.fastq, 90009000 entries so far
DEBUG actor:402725412 receives from actor:122779715, file datasets/Iowa_Continuous_Corn/GPIC.1424-3.1371.fastq, 90010000 entries so far
DEBUG actor:402725412 receives from actor:1882977711, file datasets/Iowa_Continuous_Corn/GPIC.1425-4.1367.fastq, 90010000 entries so far
DEBUG actor:402725412 receives from actor:602765326, file datasets/Iowa_Continuous_Corn/GPIC.1425-3.1367.fastq, 90010000 entries so far
DEBUG actor:402725412 receives from actor:649752862, file datasets/Iowa_Continuous_Corn/GPIC.1424-2.1371.fastq, 90010000 entries so far
DEBUG actor:402725412 receives from actor:1144056826, file datasets/Iowa_Continuous_Corn/GPIC.1424-6.1371.fastq, 90012000 entries so far
DEBUG actor:402725412 receives from actor:675296634, file datasets/Iowa_Continuous_Corn/GPIC.1425-7.1367.fastq, 90012000 entries so far
DEBUG actor:402725412 receives from actor:261732057, file datasets/Iowa_Continuous_Corn/GPIC.1425-6.1367.fastq, 80008000 entries so far
DEBUG actor:402725412 receives from actor:1630775601, file datasets/Iowa_Continuous_Corn/GPIC.1425-2.1367.fastq, 80008000 entries so far
DEBUG actor:402725412 receives from actor:1830160613, file datasets/Iowa_Continuous_Corn/GPIC.1424-5.1371.fastq, 80009000 entries so far
DEBUG actor:402725412 receives from actor:680978333, file datasets/Iowa_Continuous_Corn/GPIC.1424-1.1371.fastq, 80009000 entries so far
DEBUG actor:402725412 receives from actor:721954240, file datasets/Iowa_Continuous_Corn/GPIC.1425-5.1367.fastq, 80008000 entries so far
DEBUG actor:402725412 receives from actor:1212714640, file datasets/Iowa_Continuous_Corn/GPIC.1424-4.1371.fastq, 80008000 entries so far
DEBUG actor:402725412 receives from actor:547646904, file datasets/Iowa_Continuous_Corn/GPIC.1425-1.1367.fastq, 80008000 entries so far
DEBUG Actor 402725412 received from actor 1144056826 for file datasets/Iowa_Continuous_Corn/GPIC.1424-6.1371.fastq: 98895622 entries
DEBUG actor:402725412 receives from actor:122779715, file datasets/Iowa_Continuous_Corn/GPIC.1424-3.1371.fastq, 100011000 entries so far
DEBUG actor:402725412 receives from actor:1288734375, file datasets/Iowa_Continuous_Corn/GPIC.1424-7.1371.fastq, 100010000 entries so far
DEBUG actor:402725412 receives from actor:1882977711, file datasets/Iowa_Continuous_Corn/GPIC.1425-4.1367.fastq, 100011000 entries so far
DEBUG Actor 402725412 received from actor 649752862 for file datasets/Iowa_Continuous_Corn/GPIC.1424-2.1371.fastq: 99214846 entries
DEBUG Actor 402725412 received from actor 122779715 for file datasets/Iowa_Continuous_Corn/GPIC.1424-3.1371.fastq: 100163104 entries
DEBUG actor:402725412 receives from actor:602765326, file datasets/Iowa_Continuous_Corn/GPIC.1425-3.1367.fastq, 100011000 entries so far
DEBUG actor:402725412 receives from actor:675296634, file datasets/Iowa_Continuous_Corn/GPIC.1425-7.1367.fastq, 100013000 entries so far
DEBUG Actor 402725412 received from actor 1288734375 for file datasets/Iowa_Continuous_Corn/GPIC.1424-7.1371.fastq: 101018426 entries
DEBUG Actor 402725412 received from actor 675296634 for file datasets/Iowa_Continuous_Corn/GPIC.1425-7.1367.fastq: 102182450 entries
DEBUG Actor 402725412 received from actor 1882977711 for file datasets/Iowa_Continuous_Corn/GPIC.1425-4.1367.fastq: 104209684 entries
DEBUG actor:402725412 receives from actor:261732057, file datasets/Iowa_Continuous_Corn/GPIC.1425-6.1367.fastq, 90010000 entries so far
DEBUG actor:402725412 receives from actor:1830160613, file datasets/Iowa_Continuous_Corn/GPIC.1424-5.1371.fastq, 90010000 entries so far
DEBUG actor:402725412 receives from actor:680978333, file datasets/Iowa_Continuous_Corn/GPIC.1424-1.1371.fastq, 90010000 entries so far
DEBUG actor:402725412 receives from actor:1630775601, file datasets/Iowa_Continuous_Corn/GPIC.1425-2.1367.fastq, 90009000 entries so far
DEBUG Actor 402725412 received from actor 680978333 for file datasets/Iowa_Continuous_Corn/GPIC.1424-1.1371.fastq: 90613544 entries
DEBUG actor:402725412 receives from actor:721954240, file datasets/Iowa_Continuous_Corn/GPIC.1425-5.1367.fastq, 90009000 entries so far
DEBUG actor:402725412 receives from actor:547646904, file datasets/Iowa_Continuous_Corn/GPIC.1425-1.1367.fastq, 90009000 entries so far
DEBUG actor:402725412 receives from actor:1212714640, file datasets/Iowa_Continuous_Corn/GPIC.1424-4.1371.fastq, 90009000 entries so far
DEBUG Actor 402725412 received from actor 602765326 for file datasets/Iowa_Continuous_Corn/GPIC.1425-3.1367.fastq: 108708372 entries
DEBUG Actor 402725412 received from actor 1830160613 for file datasets/Iowa_Continuous_Corn/GPIC.1424-5.1371.fastq: 92773918 entries
DEBUG Actor 402725412 received from actor 547646904 for file datasets/Iowa_Continuous_Corn/GPIC.1425-1.1367.fastq: 96424282 entries
DEBUG actor:402725412 receives from actor:261732057, file datasets/Iowa_Continuous_Corn/GPIC.1425-6.1367.fastq, 100011000 entries so far
DEBUG actor:402725412 receives from actor:1630775601, file datasets/Iowa_Continuous_Corn/GPIC.1425-2.1367.fastq, 100010000 entries so far
DEBUG actor:402725412 receives from actor:721954240, file datasets/Iowa_Continuous_Corn/GPIC.1425-5.1367.fastq, 100010000 entries so far
DEBUG actor:402725412 receives from actor:1212714640, file datasets/Iowa_Continuous_Corn/GPIC.1424-4.1371.fastq, 100010000 entries so far
DEBUG Actor 402725412 received from actor 1212714640 for file datasets/Iowa_Continuous_Corn/GPIC.1424-4.1371.fastq: 103720072 entries
DEBUG Actor 402725412 received from actor 721954240 for file datasets/Iowa_Continuous_Corn/GPIC.1425-5.1367.fastq: 103929788 entries
DEBUG Actor 402725412 received from actor 261732057 for file datasets/Iowa_Continuous_Corn/GPIC.1425-6.1367.fastq: 104474188 entries
DEBUG Actor 402725412 received from actor 1630775601 for file datasets/Iowa_Continuous_Corn/GPIC.1425-2.1367.fastq: 109812178 entries
DEBUG spawner 800941600 is on node 0
DEBUG spawner 800941600 (0) is on a node that has 23 workers
DEBUG spawner 1163079153 is on node 1
DEBUG spawner 1163079153 (1) is on a node that has 23 workers
DEBUG spawner 139172306 is on node 2
DEBUG spawner 139172306 (2) is on a node that has 23 workers
DEBUG spawner 1114128863 is on node 3
DEBUG spawner 1114128863 (3) is on a node that has 23 workers
DEBUG sequence stores are ready (92)
DEBUG sequence store 0 is 428109700
DEBUG sequence store 1 is 1859224832
DEBUG sequence store 2 is 1817726404
DEBUG sequence store 3 is 680362304
DEBUG sequence store 4 is 313912496
DEBUG sequence store 5 is 1500090952
DEBUG sequence store 6 is 478844432
DEBUG sequence store 7 is 39457720
DEBUG sequence store 8 is 1451755824
DEBUG sequence store 9 is 1507703764
DEBUG sequence store 10 is 416969480
DEBUG sequence store 11 is 1359529400
DEBUG sequence store 12 is 1764571444
DEBUG sequence store 13 is 1041620624
DEBUG sequence store 14 is 1285050912
DEBUG sequence store 15 is 1833356416
DEBUG sequence store 16 is 1271685380
DEBUG sequence store 17 is 85992512
DEBUG sequence store 18 is 88598184
DEBUG sequence store 19 is 1333884056
DEBUG sequence store 20 is 1330670444
DEBUG sequence store 21 is 237027748
DEBUG sequence store 22 is 399115052
DEBUG sequence store 23 is 578901097
DEBUG sequence store 24 is 119377981
DEBUG sequence store 25 is 1608519685
DEBUG sequence store 26 is 1943389781
DEBUG sequence store 27 is 162177185
DEBUG sequence store 28 is 1686897305
DEBUG sequence store 29 is 1001411021
DEBUG sequence store 30 is 130052141
DEBUG sequence store 31 is 62869621
DEBUG sequence store 32 is 695320025
DEBUG sequence store 33 is 1760490061
DEBUG sequence store 34 is 273749033
DEBUG sequence store 35 is 479885021
DEBUG sequence store 36 is 1771754613
DEBUG sequence store 37 is 936128949
DEBUG sequence store 38 is 1886405325
DEBUG sequence store 39 is 1800937401
DEBUG sequence store 40 is 1624599769
DEBUG sequence store 41 is 902000829
DEBUG sequence store 42 is 1290141489
DEBUG sequence store 43 is 639195269
DEBUG sequence store 44 is 1582979161
DEBUG sequence store 45 is 972818453
DEBUG sequence store 46 is 1844228354
DEBUG sequence store 47 is 593506374
DEBUG sequence store 48 is 1290312834
DEBUG sequence store 49 is 588448238
DEBUG sequence store 50 is 1601375534
DEBUG sequence store 51 is 1943565170
DEBUG sequence store 52 is 835468498
DEBUG sequence store 53 is 604027926
DEBUG sequence store 54 is 934214258
DEBUG sequence store 55 is 529642994
DEBUG sequence store 56 is 437485650
DEBUG sequence store 57 is 1194876174
DEBUG sequence store 58 is 1340557110
DEBUG sequence store 59 is 1516663006
DEBUG sequence store 60 is 1695883970
DEBUG sequence store 61 is 471874506
DEBUG sequence store 62 is 1104197718
DEBUG sequence store 63 is 1997076010
DEBUG sequence store 64 is 7164518
DEBUG sequence store 65 is 1243370022
DEBUG sequence store 66 is 1672340926
DEBUG sequence store 67 is 1893906550
DEBUG sequence store 68 is 1893122886
DEBUG sequence store 69 is 853876991
DEBUG sequence store 70 is 1094312951
DEBUG sequence store 71 is 93871123
DEBUG sequence store 72 is 1365671991
DEBUG sequence store 73 is 951943215
DEBUG sequence store 74 is 1887658259
DEBUG sequence store 75 is 628205727
DEBUG sequence store 76 is 935568603
DEBUG sequence store 77 is 867623855
DEBUG sequence store 78 is 1951284787
DEBUG sequence store 79 is 1803255419
DEBUG sequence store 80 is 1933999127
DEBUG sequence store 81 is 365042163
DEBUG sequence store 82 is 133888743
DEBUG sequence store 83 is 1546993019
DEBUG sequence store 84 is 1980942343
DEBUG sequence store 85 is 54395407
DEBUG sequence store 86 is 91126927
DEBUG sequence store 87 is 93293983
DEBUG sequence store 88 is 1021040619
DEBUG sequence store 89 is 386638991
DEBUG sequence store 90 is 1345686867
DEBUG sequence store 91 is 1143820331
DEBUG sequence files
actor:0, 0/42 -threads-per-node 0
actor:0, 1/42 24 0
actor:0, 2/42 datasets/Iowa_Continuous_Corn/foo 0
actor:0, 3/42 datasets/Iowa_Continuous_Corn/foo~ 0
actor:0, 4/42 datasets/Iowa_Continuous_Corn/foo.out 0
actor:0, 5/42 datasets/Iowa_Continuous_Corn/GPIC.1424-1.1371.fastq 90613544
actor:0, 6/42 datasets/Iowa_Continuous_Corn/GPIC.1424-2.1371.fastq 99214846
actor:0, 7/42 datasets/Iowa_Continuous_Corn/GPIC.1424-3.1371.fastq 100163104
actor:0, 8/42 datasets/Iowa_Continuous_Corn/GPIC.1424-4.1371.fastq 103720072
actor:0, 9/42 datasets/Iowa_Continuous_Corn/GPIC.1424-5.1371.fastq 92773918
actor:0, 10/42 datasets/Iowa_Continuous_Corn/GPIC.1424-6.1371.fastq 98895622
actor:0, 11/42 datasets/Iowa_Continuous_Corn/GPIC.1424-7.1371.fastq 101018426
actor:0, 12/42 datasets/Iowa_Continuous_Corn/GPIC.1425-1.1367.fastq 96424282
actor:0, 13/42 datasets/Iowa_Continuous_Corn/GPIC.1425-2.1367.fastq 109812178
actor:0, 14/42 datasets/Iowa_Continuous_Corn/GPIC.1425-3.1367.fastq 108708372
actor:0, 15/42 datasets/Iowa_Continuous_Corn/GPIC.1425-4.1367.fastq 104209684
actor:0, 16/42 datasets/Iowa_Continuous_Corn/GPIC.1425-5.1367.fastq 103929788
actor:0, 17/42 datasets/Iowa_Continuous_Corn/GPIC.1425-6.1367.fastq 104474188
actor:0, 18/42 datasets/Iowa_Continuous_Corn/GPIC.1425-7.1367.fastq 102182450
actor:0, 19/42 datasets/Iowa_Continuous_Corn/GPIC.649-4.899.fastq 54662170
actor:0, 20/42 datasets/Iowa_Continuous_Corn/GPIC.868-1.1053.fastq 63471812
actor:0, 21/42 datasets/Iowa_Continuous_Corn/GPIC.868-2.1053.fastq 62794138
actor:0, 22/42 datasets/Iowa_Continuous_Corn/GPIC.868-3.1053.fastq 62814332
actor:0, 23/42 datasets/Iowa_Continuous_Corn/GPIC.868-4.1053.fastq 62313864
actor:0, 24/42 datasets/Iowa_Continuous_Corn/GPIC.868-5.1053.fastq 62681112
actor:0, 25/42 datasets/Iowa_Continuous_Corn/GPIC.868-6.1053.fastq 62568148
actor:0, 26/42 datasets/Iowa_Continuous_Corn/GPIC.895-5.1070.fastq 56963934
actor:0, 27/42 datasets/Iowa_Continuous_Corn/GPIC.895-6.1070.fastq 56909532
actor:0, 28/42 datasets/Iowa_Continuous_Corn/GPIC.895-7.1070.fastq 57067668
actor:0, 29/42 datasets/Iowa_Continuous_Corn/HTHO.1209-1.1231.fastq 47646564
actor:0, 30/42 datasets/Iowa_Continuous_Corn/HTHO.1209-2.1231.fastq 51802070
actor:0, 31/42 datasets/Iowa_Continuous_Corn/HTHO.1300-6.1364.fastq 39704380
actor:0, 32/42 datasets/Iowa_Continuous_Corn/HTHO.1429-2.1388.fastq 70800844
actor:0, 33/42 datasets/Iowa_Continuous_Corn/index.html 0
actor:0, 34/42 datasets/Iowa_Continuous_Corn/index.html?C=D;O=A 0
actor:0, 35/42 datasets/Iowa_Continuous_Corn/index.html?C=D;O=D 0
actor:0, 36/42 datasets/Iowa_Continuous_Corn/index.html?C=M;O=A 0
actor:0, 37/42 datasets/Iowa_Continuous_Corn/index.html?C=M;O=D 0
actor:0, 38/42 datasets/Iowa_Continuous_Corn/index.html?C=N;O=A 0
actor:0, 39/42 datasets/Iowa_Continuous_Corn/index.html?C=N;O=D 0
actor:0, 40/42 datasets/Iowa_Continuous_Corn/index.html?C=S;O=A 0
actor:0, 41/42 datasets/Iowa_Continuous_Corn/index.html?C=S;O=D 0
DEBUG Partition Total: 2228341042, block_size: 4096, blocks: 544029
DEBUG Stores: 92, Blocks per store: 5913, entries per store: 24221098
Actor 800941600 is notified by actor 402725412 that the distribution is complete
actor 800941600 stops all other actors
----------------------------------------------
biosal> Counters for node/1
BSAL_COUNTER_SPAWNED_ACTORS 36
BSAL_COUNTER_KILLED_ACTORS 36
 balance BSAL_COUNTER_BALANCE_ACTORS 0
BSAL_COUNTER_RECEIVED_MESSAGES 1141458
  BSAL_COUNTER_RECEIVED_MESSAGES_FROM_SELF 1141368
  BSAL_COUNTER_RECEIVED_MESSAGES_NOT_FROM_SELF 90
BSAL_COUNTER_SENT_MESSAGES 1712114
  BSAL_COUNTER_SENT_MESSAGES_TO_SELF 1141368
  BSAL_COUNTER_SENT_MESSAGES_NOT_TO_SELF 570746
 balance BSAL_COUNTER_BALANCE_MESSAGES -570656
BSAL_COUNTER_RECEIVED_BYTES 699
  BSAL_COUNTER_RECEIVED_BYTES_FROM_SELF 24
  BSAL_COUNTER_RECEIVED_BYTES_NOT_FROM_SELF 675
BSAL_COUNTER_SENT_BYTES 2282996
  BSAL_COUNTER_SENT_BYTES_TO_SELF 24
 BSAL_COUNTER_SENT_BYTES_NOT_TO_SELF 2282972
 balance BSAL_COUNTER_BALANCE_BYTES -2282297
----------------------------------------------
biosal> Counters for node/0
BSAL_COUNTER_SPAWNED_ACTORS 37
BSAL_COUNTER_KILLED_ACTORS 37
 balance BSAL_COUNTER_BALANCE_ACTORS 0
BSAL_COUNTER_RECEIVED_MESSAGES 3345107
  BSAL_COUNTER_RECEIVED_MESSAGES_FROM_SELF 1674677
  BSAL_COUNTER_RECEIVED_MESSAGES_NOT_FROM_SELF 1670430
BSAL_COUNTER_SENT_MESSAGES 1674943
  BSAL_COUNTER_SENT_MESSAGES_TO_SELF 1674677
  BSAL_COUNTER_SENT_MESSAGES_NOT_TO_SELF 266
 balance BSAL_COUNTER_BALANCE_MESSAGES 1670164
BSAL_COUNTER_RECEIVED_BYTES 8917076
  BSAL_COUNTER_RECEIVED_BYTES_FROM_SELF 2235392
  BSAL_COUNTER_RECEIVED_BYTES_NOT_FROM_SELF 6681684
BSAL_COUNTER_SENT_BYTES 2237388
  BSAL_COUNTER_SENT_BYTES_TO_SELF 2235392
 BSAL_COUNTER_SENT_BYTES_NOT_TO_SELF 1996
 balance BSAL_COUNTER_BALANCE_BYTES 6679688
----------------------------------------------
biosal> Counters for node/2
BSAL_COUNTER_SPAWNED_ACTORS 35
BSAL_COUNTER_KILLED_ACTORS 35
 balance BSAL_COUNTER_BALANCE_ACTORS 0
BSAL_COUNTER_RECEIVED_MESSAGES 1161252
  BSAL_COUNTER_RECEIVED_MESSAGES_FROM_SELF 1161164
  BSAL_COUNTER_RECEIVED_MESSAGES_NOT_FROM_SELF 88
BSAL_COUNTER_SENT_MESSAGES 1741806
  BSAL_COUNTER_SENT_MESSAGES_TO_SELF 1161164
  BSAL_COUNTER_SENT_MESSAGES_NOT_TO_SELF 580642
 balance BSAL_COUNTER_BALANCE_MESSAGES -580554
BSAL_COUNTER_RECEIVED_BYTES 685
  BSAL_COUNTER_RECEIVED_BYTES_FROM_SELF 24
  BSAL_COUNTER_RECEIVED_BYTES_NOT_FROM_SELF 661
BSAL_COUNTER_SENT_BYTES 2322580
  BSAL_COUNTER_SENT_BYTES_TO_SELF 24
 BSAL_COUNTER_SENT_BYTES_NOT_TO_SELF 2322556
 balance BSAL_COUNTER_BALANCE_BYTES -2321895
----------------------------------------------
biosal> Counters for node/3
BSAL_COUNTER_SPAWNED_ACTORS 35
BSAL_COUNTER_KILLED_ACTORS 35
 balance BSAL_COUNTER_BALANCE_ACTORS 0
BSAL_COUNTER_RECEIVED_MESSAGES 1038052
  BSAL_COUNTER_RECEIVED_MESSAGES_FROM_SELF 1037964
  BSAL_COUNTER_RECEIVED_MESSAGES_NOT_FROM_SELF 88
BSAL_COUNTER_SENT_MESSAGES 1557006
  BSAL_COUNTER_SENT_MESSAGES_TO_SELF 1037964
  BSAL_COUNTER_SENT_MESSAGES_NOT_TO_SELF 519042
 balance BSAL_COUNTER_BALANCE_MESSAGES -518954
BSAL_COUNTER_RECEIVED_BYTES 684
  BSAL_COUNTER_RECEIVED_BYTES_FROM_SELF 24
  BSAL_COUNTER_RECEIVED_BYTES_NOT_FROM_SELF 660
BSAL_COUNTER_SENT_BYTES 2076180
  BSAL_COUNTER_SENT_BYTES_TO_SELF 24
 BSAL_COUNTER_SENT_BYTES_NOT_TO_SELF 2076156
 balance BSAL_COUNTER_BALANCE_BYTES -2075496
Application 4642195 resources: utime ~17998s, stime ~927s, Rss ~60224, inblocks ~984147715, outblocks ~50517

 ############################################################################
 #                  Job ID: 2716005  Project: CI-#########                  #
 #                  End time: Sat Jun  7 23:04:07 CDT 2014                  #
 #                             Resources Used:                              #
 #         cput=00:00:00,mem=5828kb,vmem=130864kb,walltime=00:03:39         #
 ############################# Beagle Job End ###############################



Comments

Post a Comment

Popular posts from this blog

A survey of the burgeoning industry of cloud genomics

-
Image
I like lists. Here is a list of companies in the cloud genomics industry. Table 1: Companies acting in the industry of cloud genomics. The list is in no particular order. Company Products People Founded Link GenoSpace, LLC - GenoSpace platform - John Quackenbush (CEO) 2011 https://www.genospace.com/ DNAnexus, Inc. - DNAnexus Platform - DNAnexus Platform SDK (a.k.a. dx-toolkit) - Serafim Batzoglou (co-founder) - Andreas Sundquist (co-founder and CTO) - a bunch of other famous people in the field 2009 https://dnanexus.com/ Seven Bridges Genomics, Inc. - IGOR - IGOR Python SDK - Igor Bogicevic (CTO) 2009 https://www.sbgenomics.com/ BGI - EasyGenomics - Xing Xu (Senior Product Manager) Introduced in 2012 https://www.easygenomics.com/ Illumina, Inc. - BaseSpace™ - BaseSpace API - Alex Dickinson (SVP of Cloud Genomics) Introduced in 2011 https://basespace.illumina.com/ Era7 Information Technologies SLU - BG7...
Read more

Generating neural machine instructions for multi-head attention

-
  An animal can do training and inference every day of its existence until the day of its death. A forward pass is all you need.   Here is the current model configuration that I use for multi-head attention:         let sequence_length = 6;         let vocab_size = 20;         let n_embd = 64;         let num_heads = 8; You can see the full model here: https://github.com/sebhtml/novigrad/blob/8df6192829edd9cda3a221e12affa770fbda2a1b/src/models/mega_man_attention.rs The struct uses Embedding, MultiHeadAttention, Linear, Softmax: struct MegaManAttentionModel {     input_shape: Vec<usize>,     output_shape: Vec<usize>,     vocab_size: usize,     sequence_length: usize,     embedding: Embedding,     multi_head_attention: MultiHeadAttention, ...
Read more

Adding ZVOL VIRTIO disks to a guest running on a host with the FreeBSD BHYVE hypervisor

-
On atlantis.domain (my FreeBSD BHYVE hypervisor host), I use these commands: Install FreeBSD on a 10G disk. vm create -s 10G guestname   vm install FreeBSD-12.1-RELEASE-amd64-memstick.img vm console guestname Add 8 30GB zvol-based disks vm add -d disk -t zvol -s 30G guestname vm add -d disk -t zvol -s 30G guestname vm add -d disk -t zvol -s 30G guestname vm add -d disk -t zvol -s 30G guestname vm add -d disk -t zvol -s 30G guestname vm add -d disk -t zvol -s 30G guestname vm add -d disk -t zvol -s 30G guestname vm add -d disk -t zvol -s 30G guestname You will need to do vm poweroff guestname vm start guestname because the guest does not seem to see the 8 30GB without power cycling. (rebooting won't work) *** If you want the boot disk (the one create by "vm create") to be a zvol, you must edit the template: root@atlantis:~ # zfs snapshot tank/vm-bhyve@2020-06-11-2145 root@atlantis:~ # mount -t zfs tank/vm-bhyve@2020-06-11-2145 /tank/vm-bhyve@2020-06-11-2145 r...
Read more